View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_52 (Length: 202)
Name: NF6203_low_52
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 10707332 - 10707498
Alignment:
| Q |
18 |
taattaacttgtaatactgagaggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcacatgcatgaaaat |
117 |
Q |
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| T |
10707332 |
taattaacttgtaatactgagaggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcacatgcatgaaaat |
10707431 |
T |
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| Q |
118 |
aagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
184 |
Q |
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| T |
10707432 |
aagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
10707498 |
T |
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Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 26651607 - 26651439
Alignment:
| Q |
18 |
taattaacttgtaatactgagaggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcac--atgcatgaaa |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26651607 |
taattaacttgtaatactgagaagtaaaataaatttgaagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcactgatgcatgaaa |
26651508 |
T |
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| Q |
116 |
ataagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26651507 |
ttaagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
26651439 |
T |
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