View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6203_low_6 (Length: 555)

Name: NF6203_low_6
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6203_low_6
NF6203_low_6
[»] chr1 (8 HSPs)
chr1 (20-550)||(29449014-29449520)
chr1 (22-81)||(29462304-29462363)
chr1 (360-429)||(29457080-29457149)
chr1 (84-152)||(29462215-29462283)
chr1 (109-183)||(29444247-29444321)
chr1 (109-183)||(29454254-29454328)
chr1 (455-502)||(29456984-29457031)
chr1 (307-359)||(29461783-29461834)
[»] chr2 (7 HSPs)
chr2 (86-183)||(9363665-9363762)
chr2 (109-183)||(12019793-12019867)
chr2 (109-183)||(11988326-11988400)
chr2 (23-68)||(9363583-9363628)
chr2 (109-179)||(12007150-12007220)
chr2 (36-84)||(9069069-9069117)
chr2 (87-187)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (87-183)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (120-184)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 29449520 - 29449014
Alignment:
Q  20 tccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttcagcttcac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449520 tccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttcagcttcac 29449421  T
Q  120 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtnnnnnnnncacatgaatatcatataagtaaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  29449420 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtaaaaaaaacacatgaatatcatataagtaaac 29449321  T
Q  220 tcaacaaattagctagtcacgtgcatgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgttggatct 319  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  29449320 tcaacaaattagctagtca----catgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctg-------- 29449233  T
Q  320 ataaaacaaccttgggcacaaagggatggcattcaaagtctacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgta 419  Q
               |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449232 -----------ttgggcacaaagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgatattacaacataaaacttaatttgta 29449144  T
Q  420 gaaaaaatattcaagacatgattnnnnnnnngggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttctt 519  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449143 gaaaaaatattcaagacatgatt-aaaaaaagggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttctt 29449045  T
Q  520 gtattagattttgtgtagtacctttgcttct 550  Q
    |||||||||||||||||||||||||||||||    
T  29449044 gtattagattttgtgtagtacctttgcttct 29449014  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 29462363 - 29462304
Alignment:
Q  22 cagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaa 81  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29462363 cagaagagagatacaaatgtgtggagctacattccttatcaattcaatccttcccacaaa 29462304  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 29457149 - 29457080
Alignment:
Q  360 tacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat 429  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||  |||||||||||||||    
T  29457149 tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatat 29457080  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 29462283 - 29462215
Alignment:
Q  84 actagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 152  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462283 actagaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  109 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 183  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  109 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 183  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 29457031 - 29456984
Alignment:
Q  455 gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt 502  Q
    |||||||||||||||| | ||||||||||||||||| |||||| ||||    
T  29457031 gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt 29456984  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 29461834 - 29461783
Alignment:
Q  307 ttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtc 359  Q
    |||| ||||||||||||||||||||| ||||| |||| |||||| ||||||||    
T  29461834 ttctattggatctataaaacaaccttaggcac-aaggaatggcagtcaaagtc 29461783  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 9363665 - 9363762
Alignment:
Q  86 tagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 183  Q
    ||||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||    
T  9363665 tagaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatccttgggacaagaagtcatcc 9363762  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  109 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 183  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  109 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 183  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 9363583 - 9363628
Alignment:
Q  23 agaagtgagatacaaatgggtggagctacattccttatcaattcaa 68  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  9363583 agaagagagatacaaatggatggagctacattccttatcaattcaa 9363628  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  109 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 179  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 9069117 - 9069069
Alignment:
Q  36 aaatgggtggagctacattccttatcaattcaatccttcccacaaacca 84  Q
    ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  9069117 aaatgggtgcagcttcattctttatcaattcaacctttcccacaaacca 9069069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  87 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 186  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  187 t 187  Q
    |    
T  9287882 t 9287882  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  87 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 183  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  120 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 184  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

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