View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_9 (Length: 482)
Name: NF6203_low_9
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 137 - 467
Target Start/End: Original strand, 41518696 - 41519026
Alignment:
| Q |
137 |
gctcgataagagtacatgtttactgccgaacaagagaaaaatcattcacacggtatctactctgactaacctcccctaaataactatgctaattctacta |
236 |
Q |
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| T |
41518696 |
gctcgataagagtacatgtttactgccgaacaagagaaaaatcattcacacggtatctactctgactaacctcccctaaataactatgctaattctacta |
41518795 |
T |
|
| Q |
237 |
tgccttttggtttctaatggataacttacatcaactagaccctgccatccaaccaaacatttatctgatcacccatattgaattcaatgttcctaaagta |
336 |
Q |
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| T |
41518796 |
tgccttttggtttctaatgaataacttacgtcaactagaccctgccatccaaccaaacatttatccgatcacccataatgaattcaatgttcctaaagta |
41518895 |
T |
|
| Q |
337 |
gtattcagaccatgcatatctttataggaattaagaaatgtaagcataatttatatacctgatgatgcacctttaacttcaaactctgaagatgcatctt |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41518896 |
gtattcagaccatgcatatctttataggaattaagaaatgtaagcataatttatatacctgatgatgcacctttaacttcagactctgaagatgcatctt |
41518995 |
T |
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| Q |
437 |
tgctccctttgttcagcggctgagtactagc |
467 |
Q |
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| T |
41518996 |
tgctccctttgttcagcggctgattactagc |
41519026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 196 - 425
Target Start/End: Original strand, 33079112 - 33079340
Alignment:
| Q |
196 |
ctctgactaacctcccctaaataactatgctaattctactatgccttttggtttctaatggataacttacatcaactagaccctgccatccaaccaaaca |
295 |
Q |
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| T |
33079112 |
ctctgactaacctcccctaaataactatgctaattctactgtgccttttggatgccattgaataacttacttcgactagaccctgctatctaaccaaaca |
33079211 |
T |
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| Q |
296 |
tttatctgatcacccatattgaattcaatgttcctaaagtagtattcagaccatgcatatctttataggaattaagaaatgtaagcataatttatatacc |
395 |
Q |
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| T |
33079212 |
tat-tcatatcacacatattgaattcaatgtttgtaaactagcattaagaacatgcatatctttataggaattaagatatgtatgcataattttaatacc |
33079310 |
T |
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| Q |
396 |
tgatgatgcacctttaacttcaaactctga |
425 |
Q |
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| T |
33079311 |
tggtgatgaacctttaacttcagactctga |
33079340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 261 - 464
Target Start/End: Original strand, 41508606 - 41508802
Alignment:
| Q |
261 |
cttacatcaactagaccctgccatccaaccaaacatttatctgatcacccatattgaattcaatgttcctaaagtagtattcagaccatgcatatcttta |
360 |
Q |
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| T |
41508606 |
cttacatcaactagaccctgccatccaacaaaacatttatccgatcacacatatcaaatttaatgttcctaaggtagtattcataacaag-------ttg |
41508698 |
T |
|
| Q |
361 |
taggaattaagaaatgtaagcataatttatatacctgatgatgcacctttaacttcaaactctgaagatgcatctttgctccctttgttcagcggctgag |
460 |
Q |
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| || | | |||||||||||||||||||||||| ||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||| |
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| T |
41508699 |
ttccaaacatttattgtaagcataatttatatacctgacgatgcacctttgacttcagactctaatgatgcatctttgctccctttgttcagcggctgag |
41508798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 32876141 - 32876238
Alignment:
| Q |
1 |
acatccaacctaactatttcagataagctagggtttctagaaccnnnnnnnataaagaaaaggaaattaacaatcaaggcaatgaacaagacgaacat |
98 |
Q |
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|||||||||||||||||||||| | ||||||| ||| |||| || |||||||||| || ||||||||||||| | ||| ||||||||||||| |
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| T |
32876141 |
acatccaacctaactatttcagttgagctaggttttatagagccttttcttataaagaaaaagatattaacaatcaagtccatgtacaagacgaacat |
32876238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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