View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6204_high_1 (Length: 627)
Name: NF6204_high_1
Description: NF6204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6204_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 44 - 609
Target Start/End: Complemental strand, 36364287 - 36363722
Alignment:
| Q |
44 |
attacaaagcaatgaataaatcactgagttcagctcagccacttcccggcgccggaacgtcacggtaactcttcaaccccgccacggtaaacggaacatc |
143 |
Q |
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| T |
36364287 |
attacaaagcaatgaataaatcactcagttcagctcagccacttcccggcgccggaacgtcacggtaactcttcaaccccgccacggtaaacggaacatc |
36364188 |
T |
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| Q |
144 |
ataaactttcttcatatcaggataaaacatcccaaaattcctctccgaagtaggtcccactttcccattctcattaaaaagtgcaaacaaataaacggtc |
243 |
Q |
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| T |
36364187 |
ataaactttcttcatatcaggataaaacatcccaaaattcctctccgaagtaagtcccactttcccattctcattaaaaagtgcaaacaaataaacggtc |
36364088 |
T |
|
| Q |
244 |
agattcgcattcggtcttaaaggggtcccaccgttattaagaatcttcttaacaagattaccgttgtacgcagcagcgttctgtggggatgcacccacct |
343 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36364087 |
agattcgcattcggtcttaaaggggtcccaccgttgttaagaatcttcttaacaagattaccgttgtacgcagcagcgttctgtggggatgcacccacct |
36363988 |
T |
|
| Q |
344 |
cattactatcacctttcgaaggccaacccgtttcactgacaaccactctaacgtcgtcgtattgaagcacgttaagcgctgcaaaaacagcgtcgatttg |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36363987 |
cattactatcacctttcgaaggccaacccgtttcactgacaaccactctaacgtcgtcgtattgaagcacgttaagcgctgcaaaaacagcgtcgatttg |
36363888 |
T |
|
| Q |
444 |
tgcgtcgaagatgttgtagtattttaacccgttacccggatcaacattacccgggttttcacgaaatagagcgtagtttaaagaaatgacgtcagcgttt |
543 |
Q |
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| T |
36363887 |
tgcgtcgaagatgttgtagtattttaacccgttacctggatccacattacccgggttttcacgaaatagagcgtagtttaaagaaatgacgtcagcgttt |
36363788 |
T |
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| Q |
544 |
gactcgtaagcgaagaaggggtaaacgttgaccatcaaatacgaagacgtttcacggaggaagttt |
609 |
Q |
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| T |
36363787 |
gactcgtaagcgaagaaggggtaaacgttgaccatcaaatacgaagacgtttcacggaggaagttt |
36363722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 421 - 578
Target Start/End: Original strand, 36986097 - 36986254
Alignment:
| Q |
421 |
gctgcaaaaacagcgtcgatttgtgcgtcgaagatgttgtagtattttaacccgttacccggatcaacattacccgggttttcacgaaatagagcgtagt |
520 |
Q |
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| T |
36986097 |
gctgcaaaaacagcgtcgatttgagcgtcgaaaaggttcaagtatctcaacccgttacccgcatccacctgacccgggttttcacgaaaaagagcatagt |
36986196 |
T |
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| Q |
521 |
ttaaagaaatgacgtcagcgtttgactcgtaagcgaagaaggggtaaacgttgaccat |
578 |
Q |
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| T |
36986197 |
ctaatgagataacatcagcgtttgattcgtaagcgaaaaacgggtaaacgttaaccat |
36986254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 36986010 - 36986053
Alignment:
| Q |
334 |
gcacccacctcattactatcacctttcgaaggccaacccgtttc |
377 |
Q |
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| T |
36986010 |
gcacccacttcattaccatcaccttttgaaggccaacccgtttc |
36986053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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