View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6204_high_2 (Length: 441)

Name: NF6204_high_2
Description: NF6204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6204_high_2
NF6204_high_2
[»] chr4 (2 HSPs)
chr4 (29-427)||(24341107-24341504)
chr4 (205-407)||(6428560-6428762)
[»] chr2 (1 HSPs)
chr2 (214-287)||(41810243-41810316)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 24341504 - 24341107
Alignment:
Q  29 caaaaggaaattcatggaagccatggccatcacaaccagaagcctaaaagctgaaggaaagattcattagatacattcaataaccatgcttaaaatttgg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24341504 caaaaggaaattcatggaagccatggccatcacaaccagaagcctaaaagctgaaggaaagattcattagatacattcaataaccatgcttaaaatttgg 24341405  T
Q  129 ttggtaaataagggagaaataatnnnnnnncactatacaatttcaattccaatgctttctagtttccagtgttttgccatctttgagactttcttgtgca 228  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24341404 ttggtaaataagggagaaataataaaaaa-cactatacaatttcaattccaatgctttctagtttccagtgttttgccatctttgagactttcttgtgca 24341306  T
Q  229 tcattatccatgccaaggctggagagtgaaactgcttgaagatagaatgcagttggccaagtgggagctatcgactgagcttgcattgcgtctccaagtg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24341305 tcattatccatgccaaggctggagagtgaaactgcttgaagatagaatgcagttggccaagtgggagctatcgactgagcttgcattgcgtctccaagtg 24341206  T
Q  329 cttcttgtgccatgtcattcatcatgtagcacaggcagcgcctagcgtacacagttggcgataccatggtcccaccatcgataaactacatgaaacatg 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  24341205 cttcttgtgccatgtcattcatcatgtagcacaggcagcgcctagcgtacacagttggcgataccatggtgccaccatcgataaactacacgaaacatg 24341107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 407
Target Start/End: Complemental strand, 6428762 - 6428560
Alignment:
Q  205 ccatctttgagactttcttgtgcatcattatccatgccaaggctggagagtgaaactgcttgaagatagaatgcagttggccaagtgggagctatcgact 304  Q
    |||||||||||| | |||||||||||||| ||||| ||||||||| | ||  ||  |||||||||||| || ||||| |||||    |||| || |   |    
T  6428762 ccatctttgagagtctcttgtgcatcattttccattccaaggctgaaaagacaagttgcttgaagatataaagcagtaggccactctggagataccactt 6428663  T
Q  305 gagcttgcattgcgtctccaagtgcttcttgtgccatgtcattcatcatgtagcacaggcagcgcctagcgtacacagttggcgataccatggtcccacc 404  Q
    |||||||||| || || || || ||||| |||||||||||||||||||  ||  ||| ||||||||| || ||||| || || || ||||||||||| ||    
T  6428662 gagcttgcatggcatcccctagagcttcctgtgccatgtcattcatcaaataagacaagcagcgccttgcatacactgtaggtgacaccatggtccctcc 6428563  T
Q  405 atc 407  Q
    |||    
T  6428562 atc 6428560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 41810316 - 41810243
Alignment:
Q  214 agactttcttgtgcatcattatccatgccaaggctggagagtgaaactgcttgaagatagaatgcagttggcca 287  Q
    ||||||| |||||||||| | ||||| |||||| || |||  |  ||||||||||||||||||||||| |||||    
T  41810316 agactttgttgtgcatcaatgtccatcccaaggttgaagaaggccactgcttgaagatagaatgcagtaggcca 41810243  T

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