View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6204_high_7 (Length: 244)
Name: NF6204_high_7
Description: NF6204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6204_high_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 27844956 - 27844762
Alignment:
| Q |
50 |
ggtttcaagtaccctttatacctctttaatnnnnnnncttgcttcttattaaaaagaagtatatacattatgtgtcctagtcttacataagattcaagct |
149 |
Q |
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| T |
27844956 |
ggtttcaagtacccgttatacctctttaataaaaaa-cttgcttcttattaaaaagaaatatatacattatgtgtcctagtcttacataagattcaagct |
27844858 |
T |
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| Q |
150 |
aaacactatgattattagaggtatatatttctaagacacttaaaaa-gaccccttttttactagaagtttatattttcttttatctcttaaaaatt |
244 |
Q |
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| T |
27844857 |
aaacactatgattattagaggtatatatttctaagacacttaaaaaggaccccttttttactagaagtttatattttcttttatctcttcaaaatt |
27844762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 27846075 - 27846027
Alignment:
| Q |
10 |
aagaatattagaggtgtatgtatgtattactgttctaatgggtttcaag |
58 |
Q |
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| T |
27846075 |
aagaaaattagaggtgtatgtatgtattattgttctaatgcgtttcaag |
27846027 |
T |
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