View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6204_low_6 (Length: 251)
Name: NF6204_low_6
Description: NF6204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6204_low_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 16410601 - 16410363
Alignment:
| Q |
13 |
aatatttaaagtcatatgtgatgttacaagagaaaaataccaacataacaatcaacataataacactttccctcaaaaagaaattaacaaactaacattt |
112 |
Q |
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| T |
16410601 |
aatatttaaagtcgtatgggatgttacaagagaaaaataccaacataacaatcaacataataacactttccctcaaaaagaaattaacaaactaacattt |
16410502 |
T |
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| Q |
113 |
atcattaacaaactaatttcaaatttgatcttggactttttagatgagattggttttgaactctggttctgaactactttgaactagccatttttaagtg |
212 |
Q |
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| T |
16410501 |
atcattaacaaactaatttcaaatttgatcttggactttttagatgagattggttttgaactctggttctgaacttctttgaactagccatttttaagtg |
16410402 |
T |
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| Q |
213 |
cttctgatcttccattcaaatctatctaatctgcaatct |
251 |
Q |
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| T |
16410401 |
cttctgatcttccattcaaatctatctaatctgcaatct |
16410363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 16440375 - 16440249
Alignment:
| Q |
116 |
attaacaaactaatttcaaatttgatcttggactttttagatgagattggttttgaactctggttctgaactactttgaactagccatttttaagtgctt |
215 |
Q |
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| T |
16440375 |
attaacaaactaacttcaaacttgatctttgactttttagatgagattggtcttgaactctgattttgaacttctttgaactagccactcgtaagtgctt |
16440276 |
T |
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| Q |
216 |
ctgatcttccattcaaatctatctaat |
242 |
Q |
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| T |
16440275 |
ctgatctttcattcagatctatataat |
16440249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 16440437 - 16440362
Alignment:
| Q |
33 |
atgttacaagagaaaaataccaacataacaatcaacataataacactttccctcaaaaagaaattaacaaactaac |
108 |
Q |
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| T |
16440437 |
atgttacaagagataaataccaacataacaattaatgtaataacacattccctcaaaaagaaattaacaaactaac |
16440362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 47774103 - 47774033
Alignment:
| Q |
46 |
aaaataccaacataacaatcaacataataacactttccctcaaaaagaaattaacaaactaacatttatcat |
117 |
Q |
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| T |
47774103 |
aaaatactaacataacaattaacatactaacattttccttcaaaaa-aaattaacatactaacatttgtcat |
47774033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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