View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6205_low_1 (Length: 414)
Name: NF6205_low_1
Description: NF6205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6205_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 33605616 - 33605927
Alignment:
| Q |
18 |
agttgtaattaactaacttctgagtttgttatggagtaggatgcaatcctataagctagagtatacagtagcttagcgtagtctatcaaatagaaactct |
117 |
Q |
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| T |
33605616 |
agttgtaattaactaacttctgagtttgttatggagaaggatgcaatcctataagatagagtatacagtagcttagcgtagtctatcaaatagaaactct |
33605715 |
T |
|
| Q |
118 |
ataaatagttgttatgacttcattctcaagtaattgaataagaaagctatattctagcttatgcattttttctccttttcctttattttccatcactttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33605716 |
ataaatagttgttatgacttcattctcaagtaattgaataagaaagctatattctagcttatgcattttttctccttttcctttattttccatcactttc |
33605815 |
T |
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| Q |
218 |
tatgagttttattgttactcaacaaacctgaccctcccaaactacttcctctttcactagcttttggtttgatccatttctatatcccctggttagtcac |
317 |
Q |
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| T |
33605816 |
tatgtgttttcttgttactcaacaaacctgaccctcccaaactacttcctctttcactagcttttggtttgatccatttccatatcccctggttagtcac |
33605915 |
T |
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| Q |
318 |
tttgttcaatcc |
329 |
Q |
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|||||||||||| |
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| T |
33605916 |
tttgttcaatcc |
33605927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 406
Target Start/End: Original strand, 33605970 - 33606004
Alignment:
| Q |
372 |
gtcaactatgattgcactttcaattaatgatgatg |
406 |
Q |
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| T |
33605970 |
gtcaactatgattgcactttcaattaatgatgatg |
33606004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 239
Target Start/End: Complemental strand, 33448159 - 33447947
Alignment:
| Q |
27 |
taactaacttctgagtttgttatggagtaggatgcaatcctataagctagagtatacagtagcttagcgtagtctatcaaatagaaactctataaatagt |
126 |
Q |
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| T |
33448159 |
taactaactttagagtttgttatgatgaaggatacaatcctataagatagcgtatacaatagcttagtgtagtctatcaaataggaactctataaatact |
33448060 |
T |
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| Q |
127 |
tgttatgacttcattctcaagtaattgaataaga-aagctatattctagcttatgcattttttctccttttcctttattttccatcactttctatgagtt |
225 |
Q |
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||| || || ||||| ||||||||| ||||| | ||||||| ||||||||| | |||||| ||| |||||| | |||||| | || ||||||||| || |
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| T |
33448059 |
tgtaattgctccattcacaagtaatttaataatacaagctattttctagcttcttcattttctct-cttttcttccattttctaccagtttctatgattt |
33447961 |
T |
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| Q |
226 |
ttattgttactcaa |
239 |
Q |
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| T |
33447960 |
tccttgttactcaa |
33447947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 3931471 - 3931605
Alignment:
| Q |
106 |
aatagaaactctataaatagttgttatgacttcattctcaagtaattgaataagaaagctatattctagcttatgcattttttctccttttcctttattt |
205 |
Q |
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|||||||| || ||||||| |||| |||||||||||||| ||||| | |||||||||||||| || |||||| |||||||| |||| ||||| | |||| |
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| T |
3931471 |
aatagaaagtccataaatacttgtaatgacttcattctcgagtaactaaataagaaagctattttatagcttctgcattttctctcgttttctctaattt |
3931570 |
T |
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| Q |
206 |
tccatcactttctatgagttttattgttactcaac |
240 |
Q |
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|| ||||||||| | |||||| |||||||||||| |
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| T |
3931571 |
tctatcactttccacgagtttccttgttactcaac |
3931605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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