View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6205_low_3 (Length: 301)
Name: NF6205_low_3
Description: NF6205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6205_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 29240593 - 29240860
Alignment:
| Q |
18 |
aaatatcatccaacaaatttgcttacagtcattgaaaggtaattattacnnnnnnnnatttcaattttagagttctattgaaaagcataacgtattgtcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240593 |
aaatatcatccaacaaatttgcttacagtcattgaaaggtaattattacttttttt-atttcaattttagagttctattgaaaagcataacgtattgtcc |
29240691 |
T |
|
| Q |
118 |
tgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattctaatttttatttcttcatatcttttaggcgaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240692 |
tgctaatcttaatagatcatttttatttttgtgaggggttcttactaga----tagataggtggattctaatttttatttcttcatatcttttaggcgaa |
29240787 |
T |
|
| Q |
218 |
tgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttctt |
290 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240788 |
tgaaagtgctcgacagctggtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttctt |
29240860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 16828129 - 16828403
Alignment:
| Q |
18 |
aaatatcatccaacaaatttgcttacagtcattgaaaggtaattattacnnnnnnnnattt-----caattttagagttctattgaaaagcataacgtat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||| |||||||| | |
|
|
| T |
16828129 |
aaatatcatccaacaaatttgcttacagtcattgaaaggtaattcttattattattttttttatatcaattttacagttctattgaaaaacataacgtgt |
16828228 |
T |
|
| Q |
113 |
tgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattctaatttttatttcttcatatcttttag |
212 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| || ||||| |||||| |||| |||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
16828229 |
tgtcctgttaatcttaatggatcatttttatttttatggggggtgcttactcgataaatag----gtggattctaatttttatttcttcatatattttag |
16828324 |
T |
|
| Q |
213 |
gcg-aatgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttctt |
290 |
Q |
| |
|
| | ||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16828325 |
gaggaatgaaagtgctcgacagctggcaaaggattttttgcttgatttgcaaagtggaacattagatccgtaagttctt |
16828403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 846199 - 846161
Alignment:
| Q |
239 |
aaaggattttttgcttgatttgcaaagtggaacattaga |
277 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
846199 |
aaaggagtttttgcttgatttgcaaagtggaacactaga |
846161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 846411 - 846375
Alignment:
| Q |
21 |
tatcatccaacaaatttgcttacagtcattgaaaggt |
57 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
846411 |
tatcatccaacaaatttacttacagtaattgaaaggt |
846375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University