View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6206_low_1 (Length: 257)
Name: NF6206_low_1
Description: NF6206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6206_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2288147 - 2287906
Alignment:
| Q |
1 |
cgaggagtgtcggtgcttcataggtcgattattagtgcaaaatgtaagaaggatttatagaaatacgctgctgtatactagtttatatatgttcaaatat |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2288147 |
cgaggaatgtcagtgcttcataggtcgattattagtgcaaaatgtaagaaggatttatagaaatacgctgctgtatactagtttatatatgttcaaatat |
2288048 |
T |
|
| Q |
101 |
gctatcatcattagatacacacacattttcatagtacatgctatcattctttttcttcaggaaatgcttacatcatttgataattgatatacacacattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2288047 |
gctatcatcattagatacacacacattttcatagtacatgctatcattctttttcttcaggaaatgcttacatcatttgataattgatatacacacattt |
2287948 |
T |
|
| Q |
201 |
ttctcatatatgaaagtaaaaatcatacatagtacctctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287947 |
ttctcatatatgaaagtaaaaatcatacatagtacctctctg |
2287906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University