View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6207_high_1 (Length: 315)

Name: NF6207_high_1
Description: NF6207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6207_high_1
NF6207_high_1
[»] chr2 (1 HSPs)
chr2 (17-307)||(10381058-10381348)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 10381348 - 10381058
Alignment:
Q  17 aattcatgtatgaactggaaccagtttccttgagccttcaagggctccatctatctaaggtctaagggaccatacattgctgtccaattcattttttctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10381348 aattcatgtatgaactggaaccagtttccttgagccttcaagggctccatctatctaaggtctaagggaccatacattgctgtccaattcattttttctt 10381249  T
Q  117 atcaatgatgtaacatgcatttcataacgtagttgtgtaatacattttggtggccactgctaaacaaaggttatagtaccattatttaatgcagacttta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10381248 atcaatgatgtaacatgcatttcataacgtagttgtgtaatacattttggtggccactactaaacaaaggttatagtaccattatttaatgcagacttta 10381149  T
Q  217 gatacataataacttttaatttcaaactttaaaattttaatcaatagtgggaccgacccatgtctcttatagcctccttagtccctatgct 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10381148 gatacataataacttttaatttcaaactttaaaattttaatcaatagtgggaccgacccatgtctcttatagcctccttagtccttatgct 10381058  T

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