View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6207_low_2 (Length: 234)

Name: NF6207_low_2
Description: NF6207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6207_low_2
NF6207_low_2
[»] chr3 (14 HSPs)
chr3 (1-225)||(8755614-8755838)
chr3 (1-110)||(8746987-8747096)
chr3 (1-110)||(9023483-9023592)
chr3 (1-110)||(9034653-9034762)
chr3 (4-103)||(9015459-9015558)
chr3 (1-110)||(9029146-9029255)
chr3 (3-108)||(9019323-9019428)
chr3 (1-110)||(9101261-9101370)
chr3 (1-110)||(9108827-9108936)
chr3 (1-100)||(9112140-9112239)
chr3 (1-103)||(9026187-9026289)
chr3 (3-110)||(8957156-8957263)
chr3 (1-108)||(8965309-8965416)
chr3 (3-106)||(8962596-8962699)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8755614 - 8755838
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8755614 tggctccggcaccagatcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 8755713  T
Q  101 caagaactaattaagaacaagatggttccacttttttcatgtggatttcgtgaaacaatattgacttgtacttgtcataagaattttatgtacatcaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8755714 caagaactaattaagaacaagatggttccacttttttcatgtggatttcgtgaaacaatattgacttgtacttgtcataagaattttatgtacatcaaac 8755813  T
Q  201 aatatatacggtatagagtgatgat 225  Q
    |||||||||||||||||||||||||    
T  8755814 aatatatacggtatagagtgatgat 8755838  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8746987 - 8747096
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||| ||||||||||||||||  || |||| ||||||||||||||||||||| ||||||||||||| ||| ||| | ||||| ||||||||||||||    
T  8746987 tggctccagcaccaggtcctgatgttggagctgttggatctgttacaaattcagtggctatgattggagtttcaattgtgttgtcaatgctcgccatctt 8747086  T
Q  101 caagaactaa 110  Q
    |||| |||||    
T  8747087 caagcactaa 8747096  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9023483 - 9023592
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |||||| | |||  |||| || | ||||| ||||||||||||||    
T  9023483 tggctccggcaccaggtcctgatgctggagctgctggatctgttacaagttcagtggctatggtcggaatttcggttgtattgtcaatgctcgccatctt 9023582  T
Q  101 caagaactaa 110  Q
    |||| |||||    
T  9023583 caagcactaa 9023592  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9034653 - 9034762
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||| ||| || |||||||| |||| ||| ||| | ||||| ||||||||||||||    
T  9034653 tggctccggcaccaggtcctgatgctggagctgctggatctgttgcaagttcggtggctatgatcggagtttcaattgtgttgtcaatgctcgccatctt 9034752  T
Q  101 caagaactaa 110  Q
    |||| |||||    
T  9034753 caagcactaa 9034762  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 9015459 - 9015558
Alignment:
Q  4 ctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatcttcaa 103  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||||||  ||||| |||||| ||| ||| | ||||| |||||||||||||||||    
T  9015459 ctccggcaccaggtcctgatgccggagcagctggatatgttacaaattcagtgactatggttggagtttcaattgtattgtcaatgctcgccatcttcaa 9015558  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9029146 - 9029255
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||| ||||||||||||||||| || |||||||||||| |||||| |||||  |||||||| |||| ||| ||| | ||||| ||||||||||||||    
T  9029146 tggctccagcaccaggtcctgatgctggagctgctggatctattacaagttcagcggctatgatcggagtttcaattgtgttgtcaatgctcgccatctt 9029245  T
Q  101 caagaactaa 110  Q
    |||| |||||    
T  9029246 caagcactaa 9029255  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 9019323 - 9019428
Alignment:
Q  3 gctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatcttca 102  Q
    ||||||||||||||||||||||  || |||  |||||||||||| | ||||||||||||||| |||||||| ||| | ||||| ||||| |||||||| |    
T  9019323 gctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggagcttcaattgtgttgtcaatgcttgccatcttga 9019422  T
Q  103 agaact 108  Q
    ||||||    
T  9019423 agaact 9019428  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9101261 - 9101370
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||| |||||||| |||||||| || |||||||| |||||||||| |||||| |||||||| |||| ||| ||| | ||||| ||||||||||||||    
T  9101261 tggctccagcaccaggccctgatgctggagctgctggttctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctt 9101360  T
Q  101 caagaactaa 110  Q
     ||| |||||    
T  9101361 taagcactaa 9101370  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9108827 - 9108936
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||| ||| |||||||||||| ||| ||||| ||||||||||||| |||||| || ||||| |||||||| ||| | ||||| ||||| ||  ||||    
T  9108827 tggctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactctt 9108926  T
Q  101 caagaactaa 110  Q
     |||||||||    
T  9108927 gaagaactaa 9108936  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9112140 - 9112239
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    |||||||||||||||  |||||| |||| |||| ||||||| |||||||| |||| |||||||| ||||||| |||| | ||||| ||||| || |||||    
T  9112140 tggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggagctttgattgtgttgtcaatgcttgctatctt 9112239  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9026187 - 9026289
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||| ||||||||| ||||||| || | ||||||||||||||||| |||||| || ||||| |||| |||  || | ||||| ||| ||||||||||    
T  9026187 tggctccagcaccaggttctgatgctggagttgctggatctgttacaagttcagtggcaatgatcggagtttcagttgtattgtcaatgatcgccatctt 9026286  T
Q  101 caa 103  Q
    |||    
T  9026287 caa 9026289  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 8957156 - 8957263
Alignment:
Q  3 gctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatcttca 102  Q
    ||||| ||||| |||||||| || || ||||| |||| |||||||| ||| || |||||||| |||||||| ||| |  |||| ||| ||||||| ||||    
T  8957156 gctccagcacccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcgccattttca 8957255  T
Q  103 agaactaa 110  Q
    ||||||||    
T  8957256 agaactaa 8957263  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8965309 - 8965416
Alignment:
Q  1 tggctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatctt 100  Q
    ||||||| |||||| ||||||| || || ||||| ||||||||||||| |||  | || ||||| |||||||| ||| |  |||| |||||||| |||||    
T  8965309 tggctccagcaccaagtcctgacgctggagctgccggatctgttacaagttctatggcaatgatcggagcttcaattgtgctgtcaatgctcgcaatctt 8965408  T
Q  101 caagaact 108  Q
    ||||||||    
T  8965409 caagaact 8965416  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 8962596 - 8962699
Alignment:
Q  3 gctccggcaccaggtcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatcttca 102  Q
    ||||| ||||||||||||||||| || | ||| ||||||||| ||  ||| || |||||||| |||||||| ||| |  | || |||||||| |||||||    
T  8962596 gctccagcaccaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggagcttcaattgtgctttcaatgctcgctatcttca 8962695  T
Q  103 agaa 106  Q
    ||||    
T  8962696 agaa 8962699  T

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