View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6207_low_3 (Length: 233)
Name: NF6207_low_3
Description: NF6207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6207_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34942121 - 34941895
Alignment:
| Q |
1 |
caaataaccgaatagttgacagcatcggttcactgtttaaccggttgaactgtatggttcggttccaccatttctgaattctagacctaatagatcatta |
100 |
Q |
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| T |
34942121 |
caaataaccgaatagttgacagcatcggttcacggtttaaccggttgaactgtatggttcggttccaccatttctgaattctagacctaatagatcatta |
34942022 |
T |
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| Q |
101 |
cttgaacttcacttttatgtttatgtcataaggatacaatatgctacatggaaagaagaatgtcgccaattgtttcctcttgttggaagtggtcgattta |
200 |
Q |
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| T |
34942021 |
cttgaacttcacttttatgtttatgtcataaggatacaatatgctacatggaaaaaagaatgtcgccaattgtttcctcttgttggaagtggtcgattta |
34941922 |
T |
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| Q |
201 |
tcacatctcctgtaattactgatgatg |
227 |
Q |
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| T |
34941921 |
tcacatcccctgtaattactgatgatg |
34941895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 31398521 - 31398588
Alignment:
| Q |
137 |
caatatgctacatggaaagaagaatgtcgccaattgtttcctcttgttggaagtggtcgatttatcac |
204 |
Q |
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| T |
31398521 |
caatatgctgaatggaaggaagaatgtcgccaactgtttcctcttgtaggaagtggtagatttatcac |
31398588 |
T |
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