View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6207_low_6 (Length: 206)
Name: NF6207_low_6
Description: NF6207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6207_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 3642527 - 3642360
Alignment:
| Q |
1 |
aaatcttccttatatttttcaagagttgttttgaaaaaattaaaagacaatatgagctatatgagttcctttaaacaagattttactttcaaattttata |
100 |
Q |
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| T |
3642527 |
aaatcttccttatatttttcaagagttgttttgaaaaaattaaaagacaatatgagctatatgagttcctttaaacaagattttactttcaaattttata |
3642428 |
T |
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| Q |
101 |
aataagatgattatcatccacaaaagatgattagccatatactttaacgggcattagtaattgttaaa |
168 |
Q |
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| T |
3642427 |
aataagatgattatcatccacaaaagatgattagccatatactttaacgggcattagtaattgataaa |
3642360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 3642263 - 3642220
Alignment:
| Q |
163 |
gttaaaattggagataacaatggacgaaagtagagatttcatac |
206 |
Q |
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| T |
3642263 |
gttaaaattggagataacaatggaagaaagtagagatttcatac |
3642220 |
T |
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