View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6208_high_13 (Length: 250)
Name: NF6208_high_13
Description: NF6208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6208_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 24580665 - 24580428
Alignment:
| Q |
1 |
tttcgatttgaagtttcatgaaagtatgggatatgtttctttctgaaaaactgataataacaaaaattgaaataacaataagaaagacatagtgggttat |
100 |
Q |
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| T |
24580665 |
tttcgatttgaagtttcatgaaagtatgggatatgtttctttctgaaaaactgataataacaaaaattgaaataacaataagaaagacataatgggttat |
24580566 |
T |
|
| Q |
101 |
tcataggagtagtgatcgggtagagataggttaacaatctcacgtggcatacacctctttaacctacacatataaaagtgacatgtggcaacgtgactcc |
200 |
Q |
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| T |
24580565 |
tcataggagtagtgatcgggtagagataggttaacaatctcacgtggcatacacctccttaacctacacacataaaagtgacatgtggcgacgtgactcc |
24580466 |
T |
|
| Q |
201 |
cacacacactcatcaactttgtctctcaccctctcttc |
238 |
Q |
| |
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|| ||||||| ||||||||||| ||||||||||||||| |
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| T |
24580465 |
catacacactgatcaactttgtatctcaccctctcttc |
24580428 |
T |
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Back To:
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 41776435 - 41776400
Alignment:
| Q |
203 |
cacacactcatcaactttgtctctcaccctctcttc |
238 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
41776435 |
cacacactcctcaactttgtctctcaccctctcttc |
41776400 |
T |
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