View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6208_high_2 (Length: 494)
Name: NF6208_high_2
Description: NF6208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6208_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 480
Target Start/End: Complemental strand, 40760617 - 40760149
Alignment:
| Q |
12 |
agagagaaaaagcagtatggactttttaatactagcccataacatagcaatccaacacaccaaagacaacaaggctgtactactggttaaatacaattgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40760617 |
agagagaaaaagcagtatggactttttaatactagcacataacataaaaatccaacacaccaaagacaacaaggctgtaatactggttaaatacaattgt |
40760518 |
T |
|
| Q |
112 |
gttacacttcatgaagcctgtcttccgagaggtcacttggttgtagtctaacttttcagtcttgaggaactcggttcgagacttgggcactgggtgaaga |
211 |
Q |
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||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40760517 |
gttacacttcaaaatgcctgtctcccgagaggtcacttggttgtagtctaacttttcagccttgaggaactcggttcgagacttgggcactgggtgaaga |
40760418 |
T |
|
| Q |
212 |
gaagaaagtgaaagaaaagaaacatgaaggaaattgctctttaggcaccaacttcaaacatatgaggtatttcaaaatacctctcnnnnnnnnactctct |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40760417 |
gaagaaagtgaaagaaaagaaacatgaaggaaattgctctttaggcaccaacttcaaacatatgaggtatttcaaaatacctctcttttttttactctct |
40760318 |
T |
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| Q |
312 |
aaagtttggttcttgttctgttaccagtttgaaattggttatgaagatggaagtgtggatattctagctttgaacttgaagtgcatttgagtatagagga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40760317 |
aaagtttggttcttgttctgttaccagtttgaaattggttatgaagatggaagtgtggatattctagctttgaacttgaagtgcatttgagtatagagga |
40760218 |
T |
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| Q |
412 |
tctggtgtgtgtgtcaatttgttgctggtatagttggcacgttnnnnnnnntataaagtcatcattatg |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40760217 |
tctggtgtgtgtgtcaatttgttgctggtatagttggcacgttaaaaaaaatataaagtcatcattatg |
40760149 |
T |
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