View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6208_high_3 (Length: 390)

Name: NF6208_high_3
Description: NF6208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6208_high_3
NF6208_high_3
[»] chr2 (1 HSPs)
chr2 (39-379)||(25989745-25990082)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 39 - 379
Target Start/End: Complemental strand, 25990082 - 25989745
Alignment:
Q  39 tagtttggcatgctatcttttgtaaactatctttaagaatgttgtatctttctgggtttagttggtaat--ggactttgaaacaacagtgaataaagaat 136  Q
    |||||| |||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||  |||| || ||||||  ||||||||         
T  25990082 tagtttagcatgctatcttttgtaaactagctttatggatgttgtatttttctgggtttagttggtaattaggaccttcaaacaatggtgaataag---- 25989987  T
Q  137 tgaaattggagaatgttatgctcttcttgataggataatctagcatacttgttttgtttgattgtt-ctttgccttaacgttttctttgatatgctttta 235  Q
       |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  25989986 ---aattggaggatgctatgctctttttgataggataatctagcatacttgttttgtttgattgtttctttgcctcaacgttttctttgatatgctttta 25989890  T
Q  236 tcgttcccttgtgctgtgttcgaaaggtcactcacaaaattttaagttcaagttgatcggttgcaatactttaatc-atacttacatttgaatatcctta 334  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25989889 tcgttcccttgtgctgtgttcgaaaggtcactcaccaaattttatgttcaagttgatcggttgcaatactttaatcaatacttacatttgaatatcctta 25989790  T
Q  335 attttcctaaactcattcaataattcattttctctctagctctct 379  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  25989789 attttcctaaactcattcaacaattcattttctctctagctctct 25989745  T

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