View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6208_high_6 (Length: 380)
Name: NF6208_high_6
Description: NF6208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6208_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 3576002 - 3575647
Alignment:
| Q |
17 |
attattagcatcattattattaatgtgtatattgtattgcaattgatccaactcttgtttgcaagggtaatgctgttgttgatgttggtatgatgcatta |
116 |
Q |
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| T |
3576002 |
attattagcatcattattattaatgtgtatattgtattgcaattgatccaactcttgtttgcaaggataatgctgttgttgatgttggtatgatgcatta |
3575903 |
T |
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| Q |
117 |
taagggtgatgagaagaaattctgcttggggattcaagctctgattgcatgaatgatacttgatcatcataccaacatggtgaatcgtccattttcctca |
216 |
Q |
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| T |
3575902 |
taagggtgatgagaagaaattctgcttggggattcaagctctgattgcatgaatgatacttgatcatcataccaacatggtgaatcgtccattttcctca |
3575803 |
T |
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| Q |
217 |
ttgttgtagctattcgtttcttgaacactttacacacaacccatccttcttcctataaaatatgtgcttattacattagacaagatgataatatatatat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| |||||| |
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| T |
3575802 |
ttgttgtagctattcgtttcttgaacactttacacacaacccatccttcttcctataaaatatgtgcttattacattagacgacaagatgata-atatat |
3575704 |
T |
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| Q |
317 |
tcttgtttttcagaaaaagaaagaaaatattaaatatgtgcttattataagtattat |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575703 |
tcttgtttttcagaaaaagaaagaaaatattaaatatgtgcttattataagtattat |
3575647 |
T |
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