View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6208_low_11 (Length: 339)

Name: NF6208_low_11
Description: NF6208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6208_low_11
NF6208_low_11
[»] chr5 (9 HSPs)
chr5 (18-315)||(14395248-14395537)
chr5 (120-245)||(13208663-13208789)
chr5 (119-220)||(2707405-2707505)
chr5 (119-221)||(34064853-34064955)
chr5 (119-191)||(34064090-34064162)
chr5 (119-168)||(3969336-3969385)
chr5 (119-168)||(2312940-2312989)
chr5 (119-176)||(11571254-11571311)
chr5 (119-171)||(17219027-17219079)
[»] chr7 (8 HSPs)
chr7 (193-314)||(31872051-31872171)
chr7 (128-221)||(23365308-23365401)
chr7 (119-168)||(37034795-37034844)
chr7 (119-176)||(45551935-45551992)
chr7 (119-169)||(43444539-43444589)
chr7 (127-160)||(31872003-31872036)
chr7 (119-200)||(39586649-39586730)
chr7 (125-169)||(23364379-23364423)
[»] chr8 (7 HSPs)
chr8 (119-248)||(29703435-29703564)
chr8 (134-208)||(5664264-5664338)
chr8 (119-168)||(35044436-35044485)
chr8 (119-176)||(31042718-31042776)
chr8 (119-176)||(40317132-40317189)
chr8 (119-176)||(527725-527783)
chr8 (120-176)||(12296083-12296139)
[»] scaffold0085 (1 HSPs)
scaffold0085 (157-245)||(39096-39184)
[»] chr4 (12 HSPs)
chr4 (120-221)||(52206391-52206492)
chr4 (119-191)||(53522822-53522894)
chr4 (119-186)||(30938832-30938899)
chr4 (119-217)||(56459730-56459828)
chr4 (155-221)||(4782542-4782608)
chr4 (119-191)||(56458966-56459038)
chr4 (119-176)||(44818672-44818729)
chr4 (127-186)||(44348872-44348931)
chr4 (119-169)||(50463224-50463274)
chr4 (119-168)||(26341438-26341487)
chr4 (119-168)||(33959644-33959693)
chr4 (119-171)||(19330231-19330283)
[»] chr3 (10 HSPs)
chr3 (157-245)||(42153169-42153258)
chr3 (119-200)||(54316604-54316685)
chr3 (119-169)||(24163708-24163758)
chr3 (119-169)||(24162299-24162349)
chr3 (119-176)||(571697-571754)
chr3 (119-176)||(2779698-2779755)
chr3 (119-176)||(6105791-6105848)
chr3 (119-176)||(8351306-8351363)
chr3 (119-176)||(35652226-35652283)
chr3 (134-171)||(55201950-55201987)
[»] chr1 (9 HSPs)
chr1 (138-217)||(19402334-19402413)
chr1 (119-169)||(29117469-29117519)
chr1 (119-176)||(1169155-1169212)
chr1 (119-176)||(1170113-1170170)
chr1 (119-191)||(19403105-19403177)
chr1 (119-169)||(29116686-29116736)
chr1 (119-176)||(27789387-27789444)
chr1 (134-221)||(48578412-48578499)
chr1 (119-169)||(13258940-13258990)
[»] chr2 (8 HSPs)
chr2 (119-168)||(41432839-41432888)
chr2 (119-176)||(30517109-30517166)
chr2 (119-178)||(36780881-36780940)
chr2 (119-207)||(3130189-3130278)
chr2 (119-176)||(15401429-15401485)
chr2 (119-176)||(24398703-24398760)
chr2 (119-176)||(24399450-24399507)
chr2 (119-176)||(37570028-37570085)
[»] chr6 (4 HSPs)
chr6 (119-171)||(29200692-29200744)
chr6 (119-168)||(29299023-29299072)
chr6 (119-169)||(8172880-8172930)
chr6 (119-176)||(30322371-30322428)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 14395537 - 14395248
Alignment:
18 catagtgcagatattagcaatatgtgtaactaaatattatttatcaaaaatatcaatgnnnnnnnttattttctctaatgttttctctatatgattttga 117  Q
    |||||||||||||||||||||||||||||||          |||||||||||||||||       |||||||||||||||||||||||||||  ||||||    
14395537 catagtgcagatattagcaatatgtgtaact----------tatcaaaaatatcaatgaaaaaaattattttctctaatgttttctctatatagttttga 14395448  T
118 ttatatatata--gagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagat 215  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
14395447 ttatatatatatagagggcatatctaatgagaatgagttatttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagat 14395348  T
216 taaaaacttaacatgagttttaccctattctataaaaattcatgaacccacctacgcttctttgttcttcgcgttccaataccaagcttatctctacgtg 315  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14395347 taaaaacttaacatgagtttcaccctattctataaaaattcatgaacccacctacgcttctttgttcttcgcgttccaataccaagcttatctctacgtg 14395248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 13208663 - 13208789
Alignment:
120 atatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggat-aaaaaatgaatggaccagattaa 218  Q
    |||||||||| |||||||||   ||||||||    | ||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||    
13208663 atatatatagggggcatatcacatgagaatggacaacttatgtgagaatggtgagaacacttatcaacctttagataaaaaaatgaatggaccagattaa 13208762  T
219 aaacttaacatgagttttaccctattc 245  Q
    || ||| ||||| || | |||||||||    
13208763 aagcttcacatgtgtctcaccctattc 13208789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 2707405 - 2707505
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaa 218  Q
    |||||||||| | | ||||||||||||||||| |||| |||| |||||||||||||||| ||| |||| |||| |||||||||| ||||| |||||||||    
2707405 tatatatatatatgacatatctagtgagaatgggttaattatatgagaatggtgagaac-cttatcaacctttagataaaaaataaatggtccagattaa 2707503  T
219 aa 220  Q
    ||    
2707504 aa 2707505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 34064955 - 34064853
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaa 218  Q
    ||||||||||||||   |||||| ||||||||| ||| |||| |||||||||||||||||||| |||| |||| ||| |||||| ||||| | |||||||    
34064955 tatatatatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaa 34064856  T
219 aaa 221  Q
    |||    
34064855 aaa 34064853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 34064090 - 34064162
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatcttt 191  Q
    ||||||||||||||   |||||| ||||||||| ||| |||| |||||||||||||||||||| |||| ||||    
34064090 tatatatatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaaccttt 34064162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 3969385 - 3969336
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||||||||| ||||||||||||||||| |||  ||||||||||||    
3969385 tatatatatagaggacatatctagtgagaatgggtttgttatgtgagaat 3969336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 2312940 - 2312989
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||||| ||  |||||||||||||||||||||  ||||||||||||    
2312940 tatatatatatagaacatatctagtgagaatgagtttgttatgtgagaat 2312989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 11571254 - 11571311
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| |||||||||   ||||||||| | | ||||||||||||||||||||    
11571254 tatatatatagggggcatatcacatgagaatgactaacttatgtgagaatggtgagaa 11571311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 17219027 - 17219079
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggt 171  Q
    ||||||||||  || |||||| |||||||||||||  ||||||||||||||||    
17219027 tatatatatatgggacatatcaagtgagaatgagtattttatgtgagaatggt 17219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 31872051 - 31872171
Alignment:
193 gataaaaaatgaatggaccagattaaaaacttaacatgagttttaccctattctataaaaattcatgaacccacctacgcttctttgttcttcgcgttcc 292  Q
    |||||||||||||||||||||||||||| |||||||||  |||   |||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
31872051 gataaaaaatgaatggaccagattaaaagcttaacatgtatttctgcctattctataaaaattcatgaacccacatac-cttctttgttcttcgcgttcc 31872149  T
293 aataccaagcttatctctacgt 314  Q
    ||||||||||||||||||||||    
31872150 aataccaagcttatctctacgt 31872171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 23365401 - 23365308
Alignment:
128 agagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaaaaa 221  Q
    ||||| ||||||||||||||||   | | |||||||||||| ||||||||||||  ||| |||| ||||||||||||||| |||||||||||||    
23365401 agaggacatatctagtgagaatagataacttatgtgagaattgtgagaacacttaccaacctttagataaaaaatgaatgaaccagattaaaaa 23365308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 37034795 - 37034844
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||||||||  |||||||||||||||||||||  ||||||||||||    
37034795 tatatatatagagaacatatctagtgagaatgagtttcttatgtgagaat 37034844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 45551935 - 45551992
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| ||||||||| | |||||||||||   ||||||||||||||||||||    
45551935 tatatatatagggggcatatcaaatgagaatgagtatcttatgtgagaatggtgagaa 45551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 43444589 - 43444539
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||||||| |||||||| ||||||||| || ||||| ||||||||    
43444589 tatatatatagaggacatatctaatgagaatgacttctttatttgagaatg 43444539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 31872003 - 31872036
Alignment:
127 tagagggcatatctagtgagaatgagttatttat 160  Q
    ||||||||||||||||| ||||||||||||||||    
31872003 tagagggcatatctagtaagaatgagttatttat 31872036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 39586649 - 39586730
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaa 200  Q
    |||||||||| | | |||||||||||||||||  || ||| ||||| ||||||||||| |||| | || | |||||||||||    
39586649 tatatatatatatgacatatctagtgagaatgtcttctttttgtgaaaatggtgagaatacttattaaccgttggataaaaa 39586730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 23364379 - 23364423
Alignment:
125 tatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    ||||||||| |||||||||||||||| || | |||||||||||||    
23364379 tatagagggtatatctagtgagaatgggtaacttatgtgagaatg 23364423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 29703564 - 29703435
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaa 218  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||| |||||| ||||| | | |||||    
29703564 tatatatatagagaccatatctagtgagaatgagttaattatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaa 29703465  T
219 aaacttaacatgagttttaccctattctat 248  Q
    |||||| ||||| || | | ||||||||||    
29703464 aaacttcacatgtgtctcatcctattctat 29703435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 5664338 - 5664264
Alignment:
134 catatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatgg 208  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||||| |||| |||| ||| |||||| |||||    
5664338 catatctagtgagaatgggttaattatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatgg 5664264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 35044485 - 35044436
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||||||||| |||||||||||||||||| || |||||||||||||    
35044485 tatatatatagaggacatatctagtgagaatgacttctttatgtgagaat 35044436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 31042718 - 31042776
Alignment:
119 tatatatata-gagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| |||| |||||||||||||||||| ||| |||| |||||||||||||||    
31042718 tatatatataagaggacatatctagtgagaatgacttagttatatgagaatggtgagaa 31042776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 40317132 - 40317189
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| ||||||||| |||||||||||  | |||||||||||||||| ||||    
40317132 tatatatatagggggcatatcaagtgagaatgatatttttatgtgagaatggtaagaa 40317189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 527783 - 527725
Alignment:
119 tatatatata-gagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| |||| |||||||||||||||||  || |||||||||||||| ||||||    
527783 tatatatatatgaggacatatctagtgagaatgtcttctttatgtgagaatgatgagaa 527725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 12296139 - 12296083
Alignment:
120 atatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||| | | |||||||||||||||||  || ||||||||||||| |||||||    
12296139 atatatatatatgacatatctagtgagaatgcattttttatgtgagaattgtgagaa 12296083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 39096 - 39184
Alignment:
157 ttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaaaaacttaacatgagttttaccctattc 245  Q
    ||||||||||| | ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||| || | |||||||||    
39096 ttatgtgagaacgatgagaacacttgtcagtctttagataaaaaatgaatggaccagattaaaaacttcacatgtgtctcaccctattc 39184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 52206391 - 52206492
Alignment:
120 atatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaaa 219  Q
    ||||||||| | | |||||||||||||||||  ||| |||| ||||||||||||||| ||||||||| | |||||| |||||| |||||  |||||||||    
52206391 atatatatatatgacatatctagtgagaatggcttagttatatgagaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaa 52206490  T
220 aa 221  Q
    ||    
52206491 aa 52206492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 53522822 - 53522894
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatcttt 191  Q
    |||||||||| ||| ||||||||||||||||| |||| |||| |||||||||||||||||||| |||| ||||    
53522822 tatatatatataggacatatctagtgagaatgggttaattatatgagaatggtgagaacacttatcaaccttt 53522894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 30938899 - 30938832
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaa 186  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||| || ||||||||| ||||    
30938899 tatatatatatagggcatatctagtgagaatgagttaattatatgagaatagtaagaacacttatcaa 30938832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 56459828 - 56459730
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagatta 217  Q
    ||||||||||||||   | |||| ||||||||| ||| |||| |||||||||||||||||||| |||| |||| ||| |||||| ||||| ||||||||    
56459828 tatatatatagaggatgtttctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 56459730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 4782608 - 4782542
Alignment:
155 atttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaaaaa 221  Q
    ||||||||||||||||||||||||||| ||||| |||  ||||||| |||| ||| |||||||||||    
4782608 atttatgtgagaatggtgagaacacttatcaatttttaaataaaaattgaaaggatcagattaaaaa 4782542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 56458966 - 56459038
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatcttt 191  Q
    ||||||||||||||   |||||| ||||||||| ||| |||| |||||||||||||||||||| |||| ||||    
56458966 tatatatatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaaccttt 56459038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 44818729 - 44818672
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| ||| |||||||||||||||||  || |||||||||||||| ||||||    
44818729 tatatatatataggacatatctagtgagaatgtcttctttatgtgagaatgatgagaa 44818672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 44348931 - 44348872
Alignment:
127 tagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaa 186  Q
    |||||| ||||||||||||||||| || | |||| |||||||||||| || |||||||||    
44348931 tagaggacatatctagtgagaatgggtaagttatatgagaatggtgaaaatacttctcaa 44348872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 50463224 - 50463274
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||| ||| |||||||||||||||| | |||||||| ||||||||    
50463224 tatatatatataggacatatctagtgagaatcacttatttatatgagaatg 50463274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 26341438 - 26341487
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||| ||||  |||||||||||||||||||||  ||||||||||||    
26341438 tatatatagagagaacatatctagtgagaatgagtttcttatgtgagaat 26341487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 33959644 - 33959693
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||||||||| |||||| ||||||||||| ||  ||||||||||||    
33959644 tatatatatagaggacatatccagtgagaatgaatttgttatgtgagaat 33959693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 19330283 - 19330231
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggt 171  Q
    |||||||||| ||||||||||  |||||||||| || | ||||||||||||||    
19330283 tatatatatatagggcatatcatgtgagaatgacttttatatgtgagaatggt 19330231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 42153169 - 42153258
Alignment:
157 ttatgtgagaatggtgagaacacttctcaatctttg-gataaaaaatgaatggaccagattaaaaacttaacatgagttttaccctattc 245  Q
    ||||||||||||||||||||||||| |||  ||||  |||||||||||||||||||||||||||| |||| |||| || | |||||||||    
42153169 ttatgtgagaatggtgagaacacttatcagccttttagataaaaaatgaatggaccagattaaaagcttatcatgtgtctcaccctattc 42153258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 54316685 - 54316604
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaa 200  Q
    ||||||||||| || ||| | |||||||||||| ||| ||||||||||||||||||||||||| |||| |||| ||| ||||    
54316685 tatatatataggggacatgtttagtgagaatgacttaattatgtgagaatggtgagaacacttgtcaaactttagattaaaa 54316604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 24163758 - 24163708
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||||||  |||||||||||||||||||||  |||||||||||||    
24163758 tatatatatagagaacatatctagtgagaatgagtttgttatgtgagaatg 24163708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 24162299 - 24162349
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||| ||  |||||||||||||||||||||  |||||||||||||    
24162299 tatatatatatagaacatatctagtgagaatgagtttgttatgtgagaatg 24162349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 571754 - 571697
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| |||||||||| |||||||||||  | ||||| |||||||||| ||||    
571754 tatatatatatagggcatatcaagtgagaatgatatgtttatatgagaatggtaagaa 571697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 2779698 - 2779755
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| ||||||||||   ||||||||| | | ||||||||||||||||||||    
2779698 tatatatatatagggcatatcacatgagaatgactaacttatgtgagaatggtgagaa 2779755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 6105791 - 6105848
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| ||| |||||||  ||||||||  |||||||| |||||||||||||||    
6105791 tatatatatataggacatatcttatgagaatgcattatttatatgagaatggtgagaa 6105848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 8351306 - 8351363
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| ||||||||| |||||||||||  | ||||| |||||||||| ||||    
8351306 tatatatatagggggcatatcaagtgagaatgatatgtttatatgagaatggtaagaa 8351363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 35652283 - 35652226
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| |||||||||   ||||||||| || | |||||||||||||||||||    
35652283 tatatatatagggggcatatcacatgagaatgacttttgtatgtgagaatggtgagaa 35652226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 55201987 - 55201950
Alignment:
134 catatctagtgagaatgagttatttatgtgagaatggt 171  Q
    |||||||||||||||||||||  |||||||||||||||    
55201987 catatctagtgagaatgagtttgttatgtgagaatggt 55201950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 19402334 - 19402413
Alignment:
138 tctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagatta 217  Q
    |||| ||||||||| ||| |||| |||||||||||||||||||| |||| |||| ||| |||||| ||||| ||||||||    
19402334 tctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 19402413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 29117519 - 29117469
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||    
29117519 tatatatatagaggacatatctagtgagaatgatttctttatgtgagaatg 29117469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 1169155 - 1169212
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||||||| |||||||||||||||||  || |||||||||||||| ||||||    
1169155 tatatatatagaggacatatctagtgagaatgtcttctttatgtgagaatgatgagaa 1169212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 1170170 - 1170113
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||||||| |||||||||||||||||  || |||||||||||||| ||||||    
1170170 tatatatatagaggacatatctagtgagaatgtcttctttatgtgagaatgatgagaa 1170113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 19403177 - 19403105
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatcttt 191  Q
    ||||||||||||||   |||||| ||||||||| ||| |||| |||||||||||||||||||| |||| ||||    
19403177 tatatatatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaaccttt 19403105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 29116686 - 29116736
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||| ||| |||||||||||||||||| || ||||||||||||||    
29116686 tatatatatataggacatatctagtgagaatgatttctttatgtgagaatg 29116736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 27789444 - 27789387
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| |||||||||   ||||||||||| | ||||||||||||||||||||    
27789444 tatatatatagggggcatatcacatgagaatgagtaacttatgtgagaatggtgagaa 27789387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 48578412 - 48578499
Alignment:
134 catatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatggaccagattaaaaa 221  Q
    |||||||||||||||||  || ||||| ||||||||||||||| || | | |||| || ||| ||||||||||||   ||||||||||    
48578412 catatctagtgagaatgccttctttatatgagaatggtgagaatacatgttaatcattagattaaaaatgaatggttgagattaaaaa 48578499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 13258940 - 13258990
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||||||| |||||||| ||||||||| || ||||| ||||||||    
13258940 tatatatatagaggacatatctaatgagaatgacttctttatatgagaatg 13258990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 41432888 - 41432839
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||    
41432888 tatatatatagaggacatatctagtgagaatgagtttgttatgtgagaat 41432839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 30517109 - 30517166
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| ||||||||||   ||||||||||| ||||||||||||||| ||||||    
30517109 tatatatatatagggcatatcacatgagaatgagtaatttatgtgagaatgatgagaa 30517166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 36780940 - 36780881
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaaca 178  Q
    |||||||||||||| ||||||   ||||||||| || | |||||||||||||||||||||    
36780940 tatatatatagaggacatatcacatgagaatgacttttgtatgtgagaatggtgagaaca 36780881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 3130278 - 3130189
Alignment:
119 tatatatatag-agggcatatctagtgagaatgagttatttatgtgagaatggtgagaacacttctcaatctttggataaaaaatgaatg 207  Q
    ||||||||||| ||| ||||| || ||||||||||| | |||| | ||||||||||||| ||||||||| | || ||| |||||| ||||    
3130278 tatatatataggaggacatatgtattgagaatgagtaagttatataagaatggtgagaatacttctcaacccttagatcaaaaataaatg 3130189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 15401485 - 15401429
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| ||| |||||||||||||||||  || ||||||||||||| |||||||    
15401485 tatatatatataggacatatctagtgagaatg-cttttttatgtgagaattgtgagaa 15401429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 24398703 - 24398760
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| |||||||||   ||||||||||| | ||||||||||||||| ||||    
24398703 tatatatatagggggcatatcatatgagaatgagtaacttatgtgagaatggtaagaa 24398760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 24399507 - 24399450
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    ||||||||||| |||||||||   ||||||||||| | ||||||||||||||| ||||    
24399507 tatatatatagggggcatatcacatgagaatgagtaacttatgtgagaatggtaagaa 24399450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 37570085 - 37570028
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| ||| |||||||  ||||||||| || | |||||||||||||||||||    
37570085 tatatatatataggacatatctcatgagaatgaattttatatgtgagaatggtgagaa 37570028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 29200692 - 29200744
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggt 171  Q
    ||||||||||| ||||||||| |||||||||||||  ||||||||||||||||    
29200692 tatatatatagggggcatatcaagtgagaatgagtattttatgtgagaatggt 29200744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 29299023 - 29299072
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaat 168  Q
    |||||||||| ||| |||||||||||||||||||||  ||||||||||||    
29299023 tatatatatataggacatatctagtgagaatgagtttgttatgtgagaat 29299072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 8172930 - 8172880
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatg 169  Q
    |||||||||| |||||||||| ||||||||| |  ||||||||||||||||    
8172930 tatatatatatagggcatatcaagtgagaataacatatttatgtgagaatg 8172880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 30322371 - 30322428
Alignment:
119 tatatatatagagggcatatctagtgagaatgagttatttatgtgagaatggtgagaa 176  Q
    |||||||||| ||||||||||   |||||||||||   ||||||||||||||||||||    
30322371 tatatatatatagggcatatcacatgagaatgagtatcttatgtgagaatggtgagaa 30322428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University