View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6208_low_8 (Length: 366)
Name: NF6208_low_8
Description: NF6208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6208_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 71 - 354
Target Start/End: Complemental strand, 12088989 - 12088711
Alignment:
| Q |
71 |
cttagtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaagatgaatataatttaaagtagg |
170 |
Q |
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| T |
12088989 |
cttagtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaagatgaatataatttaaattagg |
12088890 |
T |
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| Q |
171 |
aaatggtgagttaaggcacaaggtaaggttagaagtaattaaaatgacggggcaaaatgttaagtttcttcttaaagtatatagtaaaagtttgtagtgg |
270 |
Q |
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| T |
12088889 |
aaatggtgagttaaggcactaggtaaggttagaagtaattaaaatgatggggcgaaatgttaagtt---tcttaatgtatatagtaaaagtttgtagtgg |
12088793 |
T |
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| Q |
271 |
cataattggtgtagttatatggacgtaaatggtggtggtggtgttaatatatgaggtgagactattgttaattatgatgatatt |
354 |
Q |
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| T |
12088792 |
cataactggtgtagttatatggacgtaaatggtggtggtggtgtta--atatgaggtgagactattgttaattttgatgatatt |
12088711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 12089420 - 12089364
Alignment:
| Q |
20 |
aaaggtaaatcctctcggatgataaggagtctaaaaataattgttggataccttagt |
76 |
Q |
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| T |
12089420 |
aaaggtaaatcctttaggatgataaggagtctaaaaataattgttggataccttagt |
12089364 |
T |
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