View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6209_low_1 (Length: 549)
Name: NF6209_low_1
Description: NF6209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6209_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 5488618 - 5488088
Alignment:
| Q |
16 |
cttttcttgtgaatttggaataacactaactttaacatgaaattaatcaaattctcttccaacatgagctcctttggtatcaaaaat-aagggaa----- |
109 |
Q |
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| T |
5488618 |
cttttcttgtgaatttggaa---cactaactttaacatgaaattaatcaaattctcttccaacatgagctcctttggtattaaaaatcaagggaaaattg |
5488522 |
T |
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| Q |
110 |
---cattgttggttataatgggtggcatcttcttcaaattgcttttacctcccaagctcatattgttactaacattaaagagaattttagctttgttttg |
206 |
Q |
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| T |
5488521 |
gaacattgttggttataatgggtggcatcttcttcaaattgcttttacctcccaagctcatattgttactatcattaaagagaattttagctttgttttg |
5488422 |
T |
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| Q |
207 |
ggtcttaaaactgatgtgtttaaatcttgatctctacttatgacactatagttgatcaactataa--tttatgatgggtcaccaaattggtttttaagag |
304 |
Q |
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| T |
5488421 |
agtcttaaaactgatgtgtttaaatcttgatccctacttatgacactacagttgatcaactatagagtttatgatggatcaccaaattaatttttaagag |
5488322 |
T |
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| Q |
305 |
ttagttactccaagtactcttcaagtcgttacgttgtactcgttca--atcttttaccaatctaattcattctttatgaatatttacgagtatcacctca |
402 |
Q |
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| T |
5488321 |
ttagttatttcaaatacactttagatcgttacattgtacgcgttcattatcttttaccaatctaattcattctttatgaatatttacgagtatcacctca |
5488222 |
T |
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| Q |
403 |
tgaatggtcctatatttgctttcctgttgtatcattgttatgattttcttccccacaataccatgattcataatactactctaaaggaaatcctgctgca |
502 |
Q |
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| T |
5488221 |
tgaatggtcctatgtttgctttcctgctgtatcattgttatgattttcttccctacaataccatgattcataatactactctaaaggaaatcctgctgcc |
5488122 |
T |
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| Q |
503 |
ttgaaaaatagatatgcttcaattattgctattc |
536 |
Q |
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| T |
5488121 |
ttgaaaaatagatatgcttcaattattgctattc |
5488088 |
T |
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