View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_high_100 (Length: 207)
Name: NF6210_high_100
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_100 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 5587079 - 5586906
Alignment:
| Q |
18 |
gaaacaacaataaccttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5587079 |
gaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaac |
5586980 |
T |
|
| Q |
118 |
ttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttctt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586979 |
ttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttctt |
5586906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 5593315 - 5593139
Alignment:
| Q |
18 |
gaaacaacaataaccttcctac---ctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcg |
114 |
Q |
| |
|
|||||||||| ||||||||| | |||| ||| ||| |||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
5593315 |
gaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcg |
5593216 |
T |
|
| Q |
115 |
aacttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttctt |
191 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5593215 |
aactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
5593139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 5573548 - 5573414
Alignment:
| Q |
18 |
gaaacaacaataaccttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
5573548 |
gaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaac |
5573449 |
T |
|
| Q |
118 |
ttcaattgacataatcagtaacattcttttaactt |
152 |
Q |
| |
|
| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
5573448 |
tgcaattgacataataagtaacattctttcaactt |
5573414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 5576710 - 5576585
Alignment:
| Q |
18 |
gaaacaacaataaccttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaac |
117 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5576710 |
gaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaac |
5576611 |
T |
|
| Q |
118 |
ttcaattgacataatcagtaacattc |
143 |
Q |
| |
|
||||||||||||||| |||| ||||| |
|
|
| T |
5576610 |
ttcaattgacataataagtagcattc |
5576585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 12059237 - 12059381
Alignment:
| Q |
19 |
aaacaacaataaccttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaact |
118 |
Q |
| |
|
||||||||||||||||||||||| | | ||| | |||| || |||||||||||||||| ||||| | || | ||||||||||||| ||||||||| |
|
|
| T |
12059237 |
aaacaacaataaccttcctacctttactgaatttgattagaaaccttatggaatcgactccccgatcagtgcagccagaagatttaccaatggtcgaact |
12059336 |
T |
|
| Q |
119 |
tcaattgacataatcagtaacattcttttaacttaaccatattat |
163 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||||| ||||||| |
|
|
| T |
12059337 |
gcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
54 |
attacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttt |
146 |
Q |
| |
|
||||||| ||||||||||| |||| ||||| || |||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 12051812 - 12051943
Alignment:
| Q |
19 |
aaacaacaataaccttcctacctctgcaaaatctaattacaatccttatggaatcgact--ttcc--gatgggcccaactggaagatttaccaacggtcg |
114 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| | ||||||| |||||||||||||| | |||| | | ||| |||| ||||||||||||||||||| |
|
|
| T |
12051812 |
aaacaacaataaccttcctacctttgcttaatttgattacaaaccttatggaatcgattccttcctcgctcggcgcaaccagaagatttaccaacggtcg |
12051911 |
T |
|
| Q |
115 |
aacttcaattgacataatcagtaacattcttt |
146 |
Q |
| |
|
|||| ||||| ||||||| |||||| |||||| |
|
|
| T |
12051912 |
aactgcaattaacataataagtaacgttcttt |
12051943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
106 |
caacggtcgaacttcaattgacataatcagtaac-attcttttaacttaaccatattatgaa |
166 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||| || ||| | |||||||||| |
|
|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 36358003 - 36357883
Alignment:
| Q |
18 |
gaaacaacaataaccttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaac |
117 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||| |||||||| |||||||| || || ||||| || || || |||||||||||||| || || || |
|
|
| T |
36358003 |
gaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtcctaccggaagatttaccaatggccgtac |
36357904 |
T |
|
| Q |
118 |
ttcaattgacataatcagtaa |
138 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36357903 |
ttcaattgacataatcagtaa |
36357883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University