View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_12 (Length: 479)
Name: NF6210_high_12
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 43924187 - 43923744
Alignment:
| Q |
18 |
ctttctgtgttgaaaccgccatgtgtcggtgtcggataccataccacacacctttgatcagagatgcgttgatcctaaggtagttcggatcatttataaa |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43924187 |
ctttctttgttgaaaccgccatgtgtcggtgtcggataccataccacacacctttgatcagagatgcgttgatcctaaggtggttcggatcatttataaa |
43924088 |
T |
|
| Q |
118 |
ttccaactaaacataattatcttcattaattgnnnnnnnctctcttaattattaggaatcagagtggcttagggttactttacataaatggttggatgat |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43924087 |
ttccaactaaacataattatcttcattaattgtttttttctctcataattattaggaatcagagtggcttagggttactttacataaatggttggatgat |
43923988 |
T |
|
| Q |
218 |
gaatactgtcctgaggaaacaaatgtggagataagcagagttgctgcaaaatcctactacaattctttgatacggaaacaagctgatttagctgacattt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43923987 |
gaatactgtcctgaggaaacaaatgtggagataagcagagttgctgcaaaatcctactataattctttgatacggaaacaagctgatttagctgacattt |
43923888 |
T |
|
| Q |
318 |
tgttgaatatggcacgtgaattggaaaccatttcttataaggaaagttttcatggggcatacacatctgcaaatgcggctgtaaacctaattgcgcagcg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43923887 |
tgttgaatatggcacgtgaattggaaaccatttcttataaggaaagttttcatggggcatacacatctgcaaatgcggctgtaaacctaattgcgcagcg |
43923788 |
T |
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| Q |
418 |
gattgaacaattatgccacccaaattaaattccatagctccaca |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43923787 |
gattgaacaattatgccacccaaattaaattccatagctccaca |
43923744 |
T |
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