View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_17 (Length: 429)
Name: NF6210_high_17
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 1347326 - 1346914
Alignment:
| Q |
1 |
attttgcacagagccattacctcttgttccattgcttgagttagttctacctctgaactttttccctctttagttttgcggtctaccttcctttgcacaa |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1347326 |
attttgcacagagccattacctctagttccattgcttgagttagttctacctctgaacttttgccctctttagttttgcggtctaccttcctttgcacaa |
1347227 |
T |
|
| Q |
101 |
atccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347226 |
atccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgctt |
1347127 |
T |
|
| Q |
201 |
gcatatcattcaaggtctttgagataagatctttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttca |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347126 |
gcaaatcattcaaggtctttgagataagatctttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttca |
1347027 |
T |
|
| Q |
301 |
tgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1347026 |
tgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatctttgcaaaattcaatcagctc |
1346927 |
T |
|
| Q |
401 |
aaattcttgtttt |
413 |
Q |
| |
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||||||||||||| |
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| T |
1346926 |
aaattcttgtttt |
1346914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 8675805 - 8675916
Alignment:
| Q |
80 |
ggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcattt |
179 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||||||||| || || ||| | ||||||||||||||| |||||| ||||| ||||| |
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| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcagatttgttggagctgtaaatgtttgttcgattgtgtcacttga-cctttcactcattaacattt |
8675903 |
T |
|
| Q |
180 |
catgtgactccaa |
192 |
Q |
| |
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|||| |||||||| |
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| T |
8675904 |
catgcgactccaa |
8675916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 306
Target Start/End: Original strand, 19807579 - 19807748
Alignment:
| Q |
135 |
tgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgcttgcatatcattcaaggtctttgagataagatcttt |
234 |
Q |
| |
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|||||||| |||||||||||||||| |||| | ||| ||||||||||||||| ||||| || ||||| ||||||| ||||| || | | |||||||| |
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| T |
19807579 |
tgcttgatcgattgtgtcacttgact-tttcacttatttgcatttcatgtgactgcaagggtgattgcaaatcattctaggtcgctgtgttcagatcttt |
19807677 |
T |
|
| Q |
235 |
ttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttcatgactt |
306 |
Q |
| |
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| T |
19807678 |
t-gactcttcaattgctgctaatgcgtaattgaatcagcttgttagtgttagcacaattttctccatgactt |
19807748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 9619569 - 9619623
Alignment:
| Q |
76 |
ttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagctt |
130 |
Q |
| |
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|||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| |
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|
| T |
9619569 |
ttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagctt |
9619623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 40036781 - 40036873
Alignment:
| Q |
321 |
ttattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgtttt |
413 |
Q |
| |
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|||||||| | || |||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
40036781 |
ttattcttggttttattgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgtttt |
40036873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 413
Target Start/End: Original strand, 40031340 - 40031529
Alignment:
| Q |
233 |
ttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttcatgacttgtttttctgttatatta--------- |
323 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||| |||||| | |||||| | || ||| |||| ||||||||||||||||||| ||||| |
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| T |
40031340 |
ttttgactcttgagatgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttctccatgacttgtttttctgttgtattaccattgtta |
40031439 |
T |
|
| Q |
324 |
ttcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgtttt |
413 |
Q |
| |
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||||||| || ||||||||| ||||| ||| ||||||||||| ||||| ||| || |||| |||||||||| |||||||||| ||||||| |
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| T |
40031440 |
ttcttcggtttattgaccaatgtatctatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgtttt |
40031529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 32241253 - 32241112
Alignment:
| Q |
46 |
tctacctctgaactttttccctctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcag-ttttgttggagcttgaagtgcttgattg |
144 |
Q |
| |
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||||||||| || |||| |||||||| ||| | |||||||| |||||||||||||||||| || |||||| ||||| ||||||| || || ||| | | |
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| T |
32241253 |
tctacctctaaagttttgccctctttggtt--gaggtctaccatcctttgcacaaatccctcatctgtcagattttgaaggagctttaaatgtttggtcg |
32241156 |
T |
|
| Q |
145 |
attgtgtcacttgaccctttctttcattcgcatttcatgtgactc |
189 |
Q |
| |
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||| ||||||| || |||||| |||||| ||||||||||||||| |
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| T |
32241155 |
attatgtcactcga-cctttcactcattcacatttcatgtgactc |
32241112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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