View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_high_18 (Length: 428)

Name: NF6210_high_18
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_high_18
NF6210_high_18
[»] chr1 (2 HSPs)
chr1 (224-417)||(37851248-37851433)
chr1 (17-48)||(37851138-37851169)
[»] chr7 (2 HSPs)
chr7 (236-305)||(41652010-41652080)
chr7 (263-305)||(48025466-48025508)
[»] chr5 (1 HSPs)
chr5 (271-305)||(9162051-9162085)
[»] chr8 (1 HSPs)
chr8 (271-304)||(5493952-5493985)
[»] chr3 (1 HSPs)
chr3 (273-305)||(44672406-44672438)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 224 - 417
Target Start/End: Original strand, 37851248 - 37851433
Alignment:
Q  224 ctctactttactcaagttaagaaacttataaaggaatttaaagtcagttttgtattgaaaagataaaattttaaaattttaaatgcaccattttcaaaaa 323  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||| |||||||||||||    
T  37851248 ctctactttagtcaagttaagaaacttataaaggaatttaaagtcagttttatattgaaaagataaa--------attttaaatgcgccattttcaaaaa 37851339  T
Q  324 agtaattctatatgtagtttctaaacttgtgcatttaaaatgtaatagagggtcctcgaaggtgccaacttaactgagatgtctgaaccccttt 417  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  37851340 agtaattctatatgtaatttctaaacttgtgcatttaaaatgtaatagagggtcctcgaaagtgccaacttaattgagatgtttgaaccccttt 37851433  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 37851138 - 37851169
Alignment:
Q  17 aatttgatcttggatatattggatagggaatt 48  Q
    ||||||||||||||||||||||||||||||||    
T  37851138 aatttgatcttggatatattggatagggaatt 37851169  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 41652010 - 41652080
Alignment:
Q  236 caagttaagaaacttataaaggaatttaaa-gtcagttttgtattgaaaagataaaattttaaaattttaa 305  Q
    |||||||||||||| | || |||||| ||| || | |||||||||||||||||||||||| ||| ||||||    
T  41652010 caagttaagaaactaaaaatggaattaaaaagtaacttttgtattgaaaagataaaatttcaaacttttaa 41652080  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 48025508 - 48025466
Alignment:
Q  263 aaagtcagttttgtattgaaaagataaaattttaaaattttaa 305  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||    
T  48025508 aaagtcaattttgtattgaaaagattaaattttaaatttttaa 48025466  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 9162085 - 9162051
Alignment:
Q  271 ttttgtattgaaaagataaaattttaaaattttaa 305  Q
    |||||||||||||||||||| ||||||||||||||    
T  9162085 ttttgtattgaaaagataaagttttaaaattttaa 9162051  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 5493985 - 5493952
Alignment:
Q  271 ttttgtattgaaaagataaaattttaaaatttta 304  Q
    |||||||||||||||||||||||||||| |||||    
T  5493985 ttttgtattgaaaagataaaattttaaactttta 5493952  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 305
Target Start/End: Original strand, 44672406 - 44672438
Alignment:
Q  273 ttgtattgaaaagataaaattttaaaattttaa 305  Q
    ||||||||||||||| |||||||||||||||||    
T  44672406 ttgtattgaaaagattaaattttaaaattttaa 44672438  T

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