View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_24 (Length: 380)
Name: NF6210_high_24
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 64 - 363
Target Start/End: Complemental strand, 37172877 - 37172585
Alignment:
| Q |
64 |
ttaaaaacatggcgcaagttgaaccagggcttatccgaaagagaagaatggnnnnnnnnttattttgggtccacgcacagcgcaaaattgcaaataaaac |
163 |
Q |
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| T |
37172877 |
ttaaaaacatggcgcaagttgaaccagggcttatccgaaagagaagaatggaaaaaaagttattttgggtccacgcacagcgcaaaattgcaaataa--c |
37172780 |
T |
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| Q |
164 |
tccaataccnnnnnnngaggaaaaaactccaatacctaaggttcaaattatttatttcttaatggtgtttggatagaattgttcatgtaatatcaatgat |
263 |
Q |
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| T |
37172779 |
tccaatacctttttt-gaggaaaaaactccaatacctaaggttcaaattatttatttcttaatggtgtttggatagaattgttcatgtaatatcaatgat |
37172681 |
T |
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| Q |
264 |
---ataaattt-atatagtttttaaatgtcaccaaccnnnnnnntgtcaccaacaatataacatttttctctcaaaaacaatataacatttttataatca |
359 |
Q |
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| T |
37172680 |
ataataaatatgatataaatttatatagttttcaa--------atgtcaccaacaatataacatttttctctcaaaaacaatataacatttttataatca |
37172589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 37173109 - 37173048
Alignment:
| Q |
9 |
gaagaatatagaagggaaaaggaaaagaaaagaatgttatttaaattgaatgtatttaaaaa |
70 |
Q |
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| T |
37173109 |
gaagaaaatagaagggaaaaggaaaagaaaagaatgttatttaaattggatgtatttaaaaa |
37173048 |
T |
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