View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_high_26 (Length: 376)

Name: NF6210_high_26
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_high_26
NF6210_high_26
[»] chr3 (4 HSPs)
chr3 (164-370)||(9167814-9168019)
chr3 (27-77)||(35239475-35239524)
chr3 (29-68)||(46363002-46363041)
chr3 (27-77)||(38165651-38165700)
[»] scaffold0886 (1 HSPs)
scaffold0886 (27-77)||(4098-4148)
[»] chr2 (1 HSPs)
chr2 (27-67)||(40987272-40987312)
[»] chr8 (3 HSPs)
chr8 (35-77)||(22601248-22601289)
chr8 (27-67)||(6839329-6839369)
chr8 (27-67)||(30789057-30789097)
[»] chr7 (1 HSPs)
chr7 (27-77)||(17869351-17869400)
[»] chr5 (2 HSPs)
chr5 (27-77)||(36660539-36660588)
chr5 (27-67)||(7388182-7388222)
[»] chr4 (2 HSPs)
chr4 (27-77)||(15501147-15501196)
chr4 (29-77)||(34096126-34096173)
[»] chr1 (4 HSPs)
chr1 (27-77)||(84508-84557)
chr1 (27-77)||(2245901-2245950)
chr1 (246-304)||(9307444-9307502)
chr1 (27-67)||(40060896-40060936)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 164 - 370
Target Start/End: Original strand, 9167814 - 9168019
Alignment:
Q  164 gattcgttttgaaacaaattattttggttaaagtgggagtcattt-gaagcacagatagtaatagtaagtaatattcttcaatatgaaaagatgaactct 262  Q
    |||||||||||||||||||||||||||| ||| || ||||||||| |||  ||||||| ||||||||||||||||||||||| ||||||||||||| |||    
T  9167814 gattcgttttgaaacaaattattttggtcaaaatgagagtcattttgaa--acagataataatagtaagtaatattcttcaaaatgaaaagatgaagtct 9167911  T
Q  263 acttaccacaactgatatcaattcccaatggagttgtgcaatattcaactgtacatacaagacctccgctgtcgtaattcatgtagcagttttgttggtt 362  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9167912 acttaccacaactgatatcaattcccaatggagttgtgcaatagtcaactgtacatacaagacctccgctgtcgtaattcatgtagcagttttgttggtt 9168011  T
Q  363 catctcac 370  Q
    ||| ||||    
T  9168012 catgtcac 9168019  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 35239524 - 35239475
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  35239524 cataacatttttactaaactgtccttactttataagaaaaa-gacaaactt 35239475  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 46363002 - 46363041
Alignment:
Q  29 taacatttttactaaattgtcattactttataagaaaaat 68  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  46363002 taacatttttactaaactgtccttactttataagaaaaat 46363041  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 38165651 - 38165700
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    ||||||| |||||||||| |||| ||||||||||||||||| |||||||||    
T  38165651 cataacacttttactaaactgtccttactttataagaaaaa-gacaaactt 38165700  T

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Target: scaffold0886 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 4098 - 4148
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  4098 cataacatttttacgaaattgtccttactttataaaaaaaatgacaaactt 4148  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 40987272 - 40987312
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaa 67  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  40987272 cataacacttttactaaattgtccttactttataagaaaaa 40987312  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 22601289 - 22601248
Alignment:
Q  35 ttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    ||||||||||||||| ||||||||||||||||| |||||||||    
T  22601289 ttttactaaattgtctttactttataagaaaaa-gacaaactt 22601248  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 6839369 - 6839329
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaa 67  Q
    ||||||| ||||||||||||| | |||||||||||||||||    
T  6839369 cataacacttttactaaattgcctttactttataagaaaaa 6839329  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 30789097 - 30789057
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaa 67  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  30789097 cataacacttttattaaattgtccttactttataagaaaaa 30789057  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 17869400 - 17869351
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    ||||||| ||||| ||||||||| |||||||||||||||||| ||||||||    
T  17869400 cataacacttttattaaattgtctttactttataagaaaaat-acaaactt 17869351  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 36660588 - 36660539
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    ||||||| |||||||||| |||| ||||||||||||||||| |||||||||    
T  36660588 cataacacttttactaaaatgtccttactttataagaaaaa-gacaaactt 36660539  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 7388182 - 7388222
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaa 67  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  7388182 cataatatttttactaaattgtccttattttataagaaaaa 7388222  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 15501147 - 15501196
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    |||||||||||||||||| || | |||||||||||||||||| ||||||||    
T  15501147 cataacatttttactaaactgcccttactttataagaaaaat-acaaactt 15501196  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 34096173 - 34096126
Alignment:
Q  29 taacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    ||||| ||||||||||||| | ||||||||||||||||| |||||||||    
T  34096173 taacacttttactaaattgcccttactttataagaaaaa-gacaaactt 34096126  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 84508 - 84557
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    ||||||| |||||||||| |||| ||||||||||||||||| |||||||||    
T  84508 cataacacttttactaaaatgtccttactttataagaaaaa-gacaaactt 84557  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 2245950 - 2245901
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaatgacaaactt 77  Q
    ||||| |||||||||||| ||||||| |||||||||||||| |||||||||    
T  2245950 cataatatttttactaaactgtcattcctttataagaaaaa-gacaaactt 2245901  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 9307502 - 9307444
Alignment:
Q  246 atgaaaagatgaactctacttaccacaactgatatcaattcccaatggagttgtgcaat 304  Q
    ||||||||||||| |||||||||||||| | || | || ||||||||||||| ||||||    
T  9307502 atgaaaagatgaaatctacttaccacaatttatttgaagtcccaatggagttatgcaat 9307444  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 40060896 - 40060936
Alignment:
Q  27 cataacatttttactaaattgtcattactttataagaaaaa 67  Q
    ||||||| ||||||||||||| | |||||||||||||||||    
T  40060896 cataacacttttactaaattgcccttactttataagaaaaa 40060936  T

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