View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_27 (Length: 367)
Name: NF6210_high_27
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 93 - 350
Target Start/End: Original strand, 45683998 - 45684256
Alignment:
| Q |
93 |
gattccataaatagtaaccnnnnnnnntgcaggtgcgaagactaaataggttcaaaagtgagagcaaaaatatcaaaa-gcacaaagcgatggatattta |
191 |
Q |
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| T |
45683998 |
gattccataaatagtaaccaaaaaaaatgcaggcgcgaagactaaataggttcaaaagtgagagcaaaaatatcaaaaagcacaaagcgatggatattta |
45684097 |
T |
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| Q |
192 |
tgtctgataaatattatagaatacattaaatcaaaggatgagttggtaaacaattttatcaagggattaccagtttcacagcaacaccacctcgtttttt |
291 |
Q |
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| T |
45684098 |
tgtctgataaatattatagaatacattagatcaaaggatgagttggtaaacaattttatcaagggattaccagtttcacagcaacaccacctcgtttttt |
45684197 |
T |
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| Q |
292 |
ctcagaattaaaggggaagacatggagaatctttgatcttgatctgacaagttcaaaat |
350 |
Q |
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| T |
45684198 |
ctcagaattaaaggggaagacatggagaatctttgatcttgatctgacaagttcaaaat |
45684256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 45683855 - 45683917
Alignment:
| Q |
10 |
aagaatattacaacaaatgtttctaattagcacatgaaagtcgatggaaacaacatcgaagtg |
72 |
Q |
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| T |
45683855 |
aagaagattacaacaaacgtttctgattagcacatgaaagtcgatggaaacaacatctaagtg |
45683917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 1443193 - 1443097
Alignment:
| Q |
224 |
aaaggatgagttggtaaacaattttatcaagggattaccagtttcacagcaacaccacctcgttttttctcagaattaaaggggaagacatggagaa |
320 |
Q |
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| T |
1443193 |
aaaggatgaattggtaaatattttgatcaaattattaccagcttcagagcaacaccgcctcgttttttctcggaattgaatggaaagacatgaagaa |
1443097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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