View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_28 (Length: 367)
Name: NF6210_high_28
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 11189073 - 11188756
Alignment:
| Q |
1 |
cttctgttgactatcgtaaatataaacctcaggtagtaattgatttaggaacatgcaccagtccaacaaatacaaaaaggagattcaaagaattctaatc |
100 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11189073 |
cttcggttgactatcgtaaatataaatctcaggtagtaattgatttaggaacatgcaccagtccaacaaatacaaaaaggatattcaaagaattctaatc |
11188974 |
T |
|
| Q |
101 |
cccgttaaaaatatgaatcaaaactcttttaatttttgtagcaatcaaacaatcttgcaaactccccacaatttgcaatttttaattataagtttagtaa |
200 |
Q |
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| T |
11188973 |
cccgttaaaaatatgaatcaaaactcttttaatttttgtagcaatcaaacaatcttgcaaactccccacaatttgcaatttttaattataagtttagtaa |
11188874 |
T |
|
| Q |
201 |
attatttagtaaaaaacgacaatctctacgaaaacaataacttattacttgaaacaatttaatccacttaccaaatttgtcattgtgtttttaaaaggaa |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11188873 |
attacttagtaaaaaacgacaatctctacgaaaacaataacttattacttgaaacaatttaatccacttaccaaatttgtcattgtgtttttaaaaggaa |
11188774 |
T |
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| Q |
301 |
taaaaatggtttatcata |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
11188773 |
taaaaatggtttatcata |
11188756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 11188623 - 11188568
Alignment:
| Q |
302 |
aaaaatggtttatcataatttagattttgttgatttcttttggattgttgcctttg |
357 |
Q |
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| T |
11188623 |
aaaaatggtttatcataatttagattttgttgatttcttttggattgttgcttttg |
11188568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 7196555 - 7196631
Alignment:
| Q |
148 |
aacaatcttgcaaactccccacaatttgcaatttttaattataagtttagtaaattatttagtaaaaaacgacaatc |
224 |
Q |
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||||||||| |||| ||||| |||||| | ||||||| ||||||||||||||||| |||| || |||| ||||||| |
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| T |
7196555 |
aacaatcttccaaattccccccaatttatagtttttaaatataagtttagtaaattgtttaatagaaaatgacaatc |
7196631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 9473999 - 9474123
Alignment:
| Q |
78 |
aggagattcaaagaattctaatccccgttaaaaatatgaatcaaaactcttttaatttttgtagcaatcaaacaatcttgcaaactccccacaatttgca |
177 |
Q |
| |
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||||||||| ||||||| ||||| | ||| ||||||||||| ||||||| |||| |||| | | ||||||||| || ||||||||| |||||| |
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| T |
9473999 |
aggagattcgaagaattttaatcgc-gtttaaaatatgaataaaaactcatttacttttcatcgtaatcaaacatcttttcaaactcccttcaatttatg |
9474097 |
T |
|
| Q |
178 |
atttttaattataagtttagtaaatt |
203 |
Q |
| |
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|||| |||||||||||||||||||| |
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|
| T |
9474098 |
gttttaaattataagtttagtaaatt |
9474123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29540132 - 29540177
Alignment:
| Q |
179 |
tttttaattataagtttagtaaattatttagtaaaaaacgacaatc |
224 |
Q |
| |
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||||||||||||||||||||||||| | ||||| |||||||||||| |
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|
| T |
29540132 |
tttttaattataagtttagtaaattgtctagtagaaaacgacaatc |
29540177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 24762545 - 24762597
Alignment:
| Q |
151 |
aatcttgcaaactccccacaatttgcaatttttaattataagtttagtaaatt |
203 |
Q |
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||||||||||||||| | |||||| | ||||||||||||||||||||||||| |
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| T |
24762545 |
aatcttgcaaactcctcccaatttactttttttaattataagtttagtaaatt |
24762597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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