View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_high_30 (Length: 365)

Name: NF6210_high_30
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_high_30
NF6210_high_30
[»] chr8 (2 HSPs)
chr8 (7-354)||(11484705-11485052)
chr8 (7-217)||(44957743-44957950)
[»] chr3 (39 HSPs)
chr3 (23-294)||(10500304-10500575)
chr3 (7-240)||(10527140-10527372)
chr3 (7-294)||(10517212-10517499)
chr3 (7-294)||(11782037-11782324)
chr3 (10-354)||(10260389-10260730)
chr3 (155-354)||(10126619-10126818)
chr3 (10-354)||(10031694-10032035)
chr3 (10-354)||(10663217-10663558)
chr3 (155-354)||(10183933-10184132)
chr3 (10-87)||(8861241-8861318)
chr3 (10-87)||(10889261-10889338)
chr3 (10-98)||(10375882-10375970)
chr3 (10-98)||(11160054-11160142)
chr3 (10-87)||(11131063-11131140)
chr3 (10-87)||(11148891-11148968)
chr3 (10-98)||(9838805-9838893)
chr3 (10-98)||(9849683-9849771)
chr3 (10-98)||(10126872-10126960)
chr3 (10-98)||(10580545-10580633)
chr3 (10-229)||(13170847-13171063)
chr3 (10-98)||(10077213-10077301)
chr3 (143-219)||(10376012-10376088)
chr3 (10-98)||(11769178-11769266)
chr3 (10-216)||(13332733-13332936)
chr3 (10-89)||(10184195-10184274)
chr3 (10-96)||(10088736-10088822)
chr3 (10-96)||(10195619-10195705)
chr3 (10-96)||(10363835-10363921)
chr3 (10-98)||(10434081-10434169)
chr3 (10-229)||(13343905-13344121)
chr3 (143-195)||(10088640-10088692)
chr3 (10-216)||(13160809-13161012)
chr3 (155-217)||(11769062-11769124)
chr3 (143-219)||(8861112-8861188)
chr3 (143-219)||(10889132-10889208)
chr3 (155-213)||(10363977-10364035)
chr3 (155-217)||(10580429-10580491)
chr3 (143-195)||(10195523-10195575)
chr3 (143-219)||(11160184-11160260)
[»] chr4 (1 HSPs)
chr4 (7-294)||(17852978-17853265)
[»] chr2 (1 HSPs)
chr2 (10-217)||(26906725-26906929)
[»] scaffold0002 (2 HSPs)
scaffold0002 (10-229)||(135925-136141)
scaffold0002 (10-229)||(145976-146192)
[»] scaffold0083 (1 HSPs)
scaffold0083 (155-213)||(49987-50045)
[»] chr6 (1 HSPs)
chr6 (19-85)||(31679779-31679845)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 11485052 - 11484705
Alignment:
Q  7 ttcaactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctg 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11485052 ttcaactttttcatcgttgtaaacaagttgtgcaagggtcgttttaccgacgcctcccataaccaaaattgcaacaacacctaaattattatatctgctg 11484953  T
Q  107 gtaccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccac 206  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||| ||    
T  11484952 gtaccacagtctgataccaacacatcaaggagtctatctttatcttcattccttcccaccataacagattcattcaccactgaacttgatggtgttctac 11484853  T
Q  207 gagaaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11484852 gagaaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgct 11484753  T
Q  307 ttctccatttgagtttgaagttgaaagcaaattccaaaactgatctgt 354  Q
     |||||||||||||||  |||||||||||| |||||||||||||||||    
T  11484752 ctctccatttgagtttttagttgaaagcaagttccaaaactgatctgt 11484705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 44957743 - 44957950
Alignment:
Q  7 ttcaactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctg 106  Q
    ||||||||||  ||||||||||||||||||||| || |||||||||||||| ||||||||||| ||  | |||||||||||||||||||||| |||||||    
T  44957743 ttcaacttttatatcattgtaaacaagttgtgcgagagtcgttttaccgacacctcccatacctaaggtggcaacaacacctaaattattatttctgctg 44957842  T
Q  107 gtaccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccac 206  Q
    ||    | ||||||||||| |||||| | ||||||||||||||| |  ||||| |||||||| | ||||||||| ||| | |||||||| || |||| |     
T  44957843 gt---gctgtctgataccagcatatctatgagtctatctttatcatgtttcctgcccaccataatagattcattaacccctgaacttgaaggtgttctat 44957939  T
Q  207 gagaaactcta 217  Q
    |||||||||||    
T  44957940 gagaaactcta 44957950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 10500575 - 10500304
Alignment:
Q  23 ttgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggtaccacagtctgata 122  Q
    |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  || |||   |||||||    
T  10500575 ttgtaaacaagttgagcaagtgttgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatttctgcctgttccaatatctgata 10500476  T
Q  123 ccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactctacctct 222  Q
    |||||||||  | ||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| || |||| ||||||||||||||| ||    
T  10500475 ccaacatattgacgagtctatctttatcatcattcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgagaaactctaccact 10500376  T
Q  223 tacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccat 294  Q
    |||||||||||| ||||| | ||| |   ||||||||||||||||||||||||||||||| |||||||||||    
T  10500375 tacagttctttgtaagccaaggatatctttctgctggacaaaagtttgcagccttttacacatcttctccat 10500304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 10527372 - 10527140
Alignment:
Q  7 ttcaactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctg 106  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||    
T  10527372 ttcaaccttttcatcattgtaaacaagttgtgcaagggttgttttaccgacacctcccatacccaagattgcaacaacacctaaattattatttctactg 10527273  T
Q  107 gtaccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccac 206  Q
    || ||||||||||||||||||||||  | ||||| ||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||| || |||| ||    
T  10527272 gtgccacagtctgataccaacatattgatgagtc-atctttatcatcattcctacccacaatgacagattcatttaccactgaacttgaaggggttctac 10527174  T
Q  207 gagaaactctacctcttacagttctttgcaagcc 240  Q
    |||||| |||| | ||||||||||| ||||||||    
T  10527173 gagaaaatctatcacttacagttctctgcaagcc 10527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 10517499 - 10517212
Alignment:
Q  7 ttcaactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctg 106  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||     
T  10517499 ttcaacttttgcatcattgtaaacaaactgtgcaagggtcgttttaccgacgcctcccatacccacaattgcagcaacacctaaattattatttctgctt 10517400  T
Q  107 gtaccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccac 206  Q
    || |||   ||||||||||||||||  | ||||||||||||||| |||||||| ||||||| | |||||||||| | ||||||||||||  | |||| |     
T  10517399 gtgccaacatctgataccaacatattgatgagtctatctttatcatcattcctacccaccacgtcagattcatttagcaccgaacttgaaagggttctag 10517300  T
Q  207 gagaaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccat 294  Q
     |||||||| ||| ||||| |||||||||||||| |   | |   |||| ||||||||||||||||| |||||||| |||||||||||    
T  10517299 aagaaactccaccacttaccgttctttgcaagccaagtgtatctttctgttggacaaaagtttgcagtcttttacacatcttctccat 10517212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 11782037 - 11782324
Alignment:
Q  7 ttcaactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctg 106  Q
    |||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  11782037 ttcaactttcacatcattgtaaacaagctgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcgacaacacctaaattattatttctgctg 11782136  T
Q  107 gtaccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccac 206  Q
    || |  | |||||||| || |||||  | ||||||||||||||| |||||||| ||||||| | |||||| ||| | ||| |||||||| || |||| |     
T  11782137 gtgctgcggtctgatatcagcatattgatgagtctatctttatcatcattcctacccaccacgtcagattgatttagcactgaacttgaaggggttctag 11782236  T
Q  207 gagaaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccat 294  Q
     |||||||| ||| ||||| |||||||||||||| |   | |   |||| |||||||||||||||||||||||||| |||||||||||    
T  11782237 aagaaactccaccacttaccgttctttgcaagccaagtgtatctttctggtggacaaaagtttgcagccttttacacatcttctccat 11782324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 10260730 - 10260389
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| |||||| |   || | ||     
T  10260730 aacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattgt---tggttgtt 10260634  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
     | |  | ||||| |||||| |  |  | | | ||||| || || ||||| |||||||||||||||||||| ||||| |||||||| |||  || | |||    
T  10260633 tctctctgtgatagcaacatgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggcagtctatgag 10260534  T
Q  210 aaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgctttc 309  Q
    |||||||||| ||||||||   ||||||||| | |  | | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||    
T  10260533 aaactctaccacttacagtgtgttgcaagccgatggcggtgctctgctggacaaaagtttgcagccttttacaaatcttctgcatttcagaattgatctc 10260434  T
Q  310 tccatttgagtttgaagttgaaagcaaattccaaaactgatctgt 354  Q
    | ||||||||||||||||||||||||| |||| ||||||||||||    
T  10260433 ttcatttgagtttgaagttgaaagcaagttccgaaactgatctgt 10260389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 155 - 354
Target Start/End: Complemental strand, 10126818 - 10126619
Alignment:
Q  155 ttccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactctacctcttacagttctttgcaagcccaagatgttactct 254  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |||  || | ||||||||||||| ||||||||   ||||||||| | |  | | ||||    
T  10126818 ttcctacccaccatgacagattcatttaccactgaacttgaaggcagtctatgagaaactctaccacttacagtgtgttgcaagccgatggcggtgctct 10126719  T
Q  255 gctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgctttctccatttgagtttgaagttgaaagcaaattccaaaactgatctgt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |||  ||||||||||||    
T  10126718 gctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgatctctccatttgagtttgtagttgaaagcaagttctgaaactgatctgt 10126619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 10032035 - 10031694
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat-atctgctggt 108  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    |||  ||    
T  10032035 aacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattatgggatgc--gt 10031938  T
Q  109 accacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacga 208  Q
      | |  | ||||| |||||| |  |  | | | ||||| || || ||||| |||||||||| ||||||||| ||||| |||||||| |||  || | ||    
T  10031937 --ctctctgtgatagcaacatgttcattattgtctctttgtcatccttcctacccaccatgagagattcatttaccactgaacttgaaggcagtctatga 10031840  T
Q  209 gaaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgcttt 308  Q
    ||||||||||| ||||||||   ||||||||| | |  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  10031839 gaaactctaccacttacagtgtgttgcaagccgatggcggtgctctgctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgatct 10031740  T
Q  309 ctccatttgagtttgaagttgaaagcaaattccaaaactgatctgt 354  Q
    || |||||||||||| |||||||||||| |||| ||||||||||||    
T  10031739 cttcatttgagtttgtagttgaaagcaagttccgaaactgatctgt 10031694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 10663558 - 10663217
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    | | ||     
T  10663558 aacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattatg---ggttgtg 10663462  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
     | |  | ||||| |||||| |  |  | | | ||||| ||  | ||||| |||||||||| ||||||||| ||||| |||||||| |||  || | |||    
T  10663461 tctctctgtgatagcaacatgttcattattgtctctttgtcacccttcctacccaccatgagagattcatttaccactgaacttgaaggcagtctatgag 10663362  T
Q  210 aaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgctttc 309  Q
    |||||||||| ||||||||   ||||||||| | |  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  10663361 aaactctaccacttacagtgtgttgcaagccgatggcggtgctctgctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgatctc 10663262  T
Q  310 tccatttgagtttgaagttgaaagcaaattccaaaactgatctgt 354  Q
    | |||||||||||| |||||||||||| |||  ||||||||||||    
T  10663261 ttcatttgagtttgtagttgaaagcaagttctgaaactgatctgt 10663217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 155 - 354
Target Start/End: Complemental strand, 10184132 - 10183933
Alignment:
Q  155 ttccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactctacctcttacagttctttgcaagcccaagatgttactct 254  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |||  || | ||||||||||||| ||||||||   ||||||||| | |  | | ||||    
T  10184132 ttcctacccaccatgacagattcatttaccactgaacttgaaggcagtctatgagaaactctaccacttacagtgtgttgcaagccgatggcggtgctct 10184033  T
Q  255 gctggacaaaagtttgcagccttttacaaatcttctccatttcagaattgctttctccatttgagtttgaagttgaaagcaaattccaaaactgatctgt 354  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||| |||||||||||| |||||||||||| |||| ||||||||||||    
T  10184032 gctggacaaaagtttgcagccttttataaatcttcttcatttcagaattgatctcttcatttgagtttgtagttgaaagcaagttccgaaactgatctgt 10183933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 8861318 - 8861241
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacc 87  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  8861318 aactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacacc 8861241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 10889338 - 10889261
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacc 87  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  10889338 aactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacacc 10889261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 10375882 - 10375970
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    |||||||||||||||||||||||||||||||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    
T  10375882 aactttttcatcattgtaaacaagttgtgcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 10375970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 11160054 - 11160142
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| ||| ||||    
T  11160054 aactttttcattattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacgcctatattgttat 11160142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 11131063 - 11131140
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacc 87  Q
    ||||||||||||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||    
T  11131063 aactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaacaacacc 11131140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 11148891 - 11148968
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacc 87  Q
    ||||||||||||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||    
T  11148891 aactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaacaacacc 11148968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 9838893 - 9838805
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||| ||||    
T  9838893 aacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat 9838805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 9849771 - 9849683
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||| ||||    
T  9849771 aacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat 9849683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 10126960 - 10126872
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    
T  10126960 aacttctttatcattgtaaacaagttgggcaagggtagtttttcccaaacctcccatgcccaaaattgcaacaacacctatattattat 10126872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 10580633 - 10580545
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    
T  10580633 aacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 10580545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 13171063 - 13170847
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||| |||| |||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| | | || |||   || | ||     
T  13171063 aacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactat---tggtagtg 13170967  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
    |||| ||| |||| |||||||  || |||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||| |||||||   |||    
T  13170966 ccactgtcagatatcaacatactaatgagtctctctttatcatccttccttccaaccataacagattcatttaccattgaacttgaaggcgttcttagag 13170867  T
Q  210 aaactctacctcttacagtt 229  Q
    ||||||| || || ||||||    
T  13170866 aaactctcccgctcacagtt 13170847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 10077301 - 10077213
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    |||||| | |||||||||||||||||| |||||||| ||||| || |  |||||||| ||||||||||||||||||||||  |||||||    
T  10077301 aactttataatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatcttattat 10077213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 10376012 - 10376088
Alignment:
Q  143 tctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactctacc 219  Q
    |||||||| || ||||| |||||||||||||||||||| ||||| |||||||| || |||| |||||||||||||||    
T  10376012 tctttatcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgagaaactctacc 10376088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 11769266 - 11769178
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    ||||| || ||||||||| |||||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    
T  11769266 aacttctttatcattgtagacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 11769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 13332936 - 13332733
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||| |||| |||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| | | || |||   || | ||     
T  13332936 aacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaacactactat---tggtagtg 13332840  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
    |||| ||| |||| |||||||  || |||||| |||||||| || ||||| || ||||| ||||||||||| ||||  |||||||| ||||||| | |||    
T  13332839 ccactgtcagatatcaacatactaatgagtctctctttatcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttctaagag 13332740  T
Q  210 aaactct 216  Q
    |||||||    
T  13332739 aaactct 13332733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 10184274 - 10184195
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacaccta 89  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| ||||||||||||||||||||||    
T  10184274 aacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta 10184195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 10088822 - 10088736
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattatt 96  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| || ||||||||||||||||||| ||||||    
T  10088822 aacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatattatt 10088736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 10195705 - 10195619
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattatt 96  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| || ||||||||||||||||||| ||||||    
T  10195705 aacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatattatt 10195619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 10363835 - 10363921
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattatt 96  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| || ||||||||||||||||||| ||||||    
T  10363835 aacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatattatt 10363921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 10434081 - 10434169
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 98  Q
    ||||| || |||||||||||||||||| |||||||| ||||| || |  |||||||| || |||||||||||||||||||  |||||||    
T  10434081 aacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatcttattat 10434169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 13344121 - 13343905
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||| |||| |||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| | | || |||   || | ||     
T  13344121 aacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactat---tggtagtg 13344025  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
    |||| ||| |||| |||||||  || |||||| |||||||| || ||||| || ||||| ||||||||||| ||||  |||||||| || ||||   |||    
T  13344024 ccactgtcagatatcaacatactaatgagtctctctttatcatccttcctaccaaccataacagattcatttaccattgaacttgaaggtgttcttagag 13343925  T
Q  210 aaactctacctcttacagtt 229  Q
    ||||||| || || ||||||    
T  13343924 aaactctcccgctcacagtt 13343905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 10088692 - 10088640
Alignment:
Q  143 tctttatcttcattccttcccaccatgacagattcattcaccaccgaacttga 195  Q
    |||||||| || ||||| |||||||||||||||||||| ||||||||||||||    
T  10088692 tctttatcatccttcctacccaccatgacagattcatttaccaccgaacttga 10088640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 13161012 - 13160809
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||| |||| |||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| | | || |||   || | ||     
T  13161012 aacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactat---tggtagtg 13160916  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
    |||| ||| |||| |||||||  || |||||| || ||||| || ||||| || ||||| ||||||||||| ||||  |||||||| |||||||   |||    
T  13160915 ccactgtcagatatcaacatactaacgagtctctccttatcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttcttagag 13160816  T
Q  210 aaactct 216  Q
    |||||||    
T  13160815 aaactct 13160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 11769124 - 11769062
Alignment:
Q  155 ttccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactcta 217  Q
    ||||| ||||| |||||||||||||| ||||| |||||||| || |||| |||||||||||||    
T  11769124 ttcctacccactatgacagattcatttaccactgaacttgaaggtgttctacgagaaactcta 11769062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 8861188 - 8861112
Alignment:
Q  143 tctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactctacc 219  Q
    |||||||| ||||| || || ||||||||||||||||| || || |||||||| || |||| |||||||||| ||||    
T  8861188 tctttatcatcatttctaccaaccatgacagattcattaactactgaacttgaaggggttctacgagaaactttacc 8861112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 10889208 - 10889132
Alignment:
Q  143 tctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactctacc 219  Q
    |||||||| ||||| || || ||||||||||||||||| || || |||||||| || |||| |||||||||| ||||    
T  10889208 tctttatcatcatttctaccaaccatgacagattcattaactactgaacttgaaggggttctacgagaaactttacc 10889132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 10363977 - 10364035
Alignment:
Q  155 ttccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaac 213  Q
    ||||| |||||||||||||||||||| ||||| |||||||| || |||| ||| |||||    
T  10363977 ttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaac 10364035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 10580491 - 10580429
Alignment:
Q  155 ttccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactcta 217  Q
    ||||| ||||||||||||||||| || | ||| |||||||| || |||||| |||||||||||    
T  10580491 ttcctacccaccatgacagattcgttaaacacagaacttgaaggagttccatgagaaactcta 10580429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 10195575 - 10195523
Alignment:
Q  143 tctttatcttcattccttcccaccatgacagattcattcaccaccgaacttga 195  Q
    |||||||| || || || |||||||||||||||||||| ||||| ||||||||    
T  10195575 tctttatcatcctttctacccaccatgacagattcatttaccactgaacttga 10195523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 11160184 - 11160260
Alignment:
Q  143 tctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaactctacc 219  Q
    |||||||| ||||| || || |||||||||||| |||| || || |||||||| || |||| |||||||||| ||||    
T  11160184 tctttatcatcatttctaccaaccatgacagatgcattaactactgaacttgaaggggttctacgagaaactttacc 11160260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 17852978 - 17853265
Alignment:
Q  7 ttcaactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctg 106  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| | |||||    
T  17852978 ttcaaccttttcatcattgtaaacaagctgtgcaagggtcgttttaccgacacctcccatccccaatattgcaacaacacctaaattgttatttatgctg 17853077  T
Q  107 gtaccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccac 206  Q
    || ||   ||||||||||| ||||   |  ||||||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||||| || |||| ||    
T  17853078 gtgcctatgtctgataccagcatactgacaagtctatttttatcatcattccttcctaccatgacagattcatttaccacggaacttgaaggggttctac 17853177  T
Q  207 gagaaactctacctcttacagttctttgcaagcccaagatgttactctgctggacaaaagtttgcagccttttacaaatcttctccat 294  Q
    ||||||||||||| ||||| |||||||||||||  | |||||   ||||||||||||||||||||| ||||||||| |||||||||||    
T  17853178 gagaaactctaccacttaccgttctttgcaagcaaaggatgtctttctgctggacaaaagtttgcaaccttttacacatcttctccat 17853265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 26906929 - 26906725
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || ||||||||||| |||||| |||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    | | ||     
T  26906929 aacttctttatcattgtaaagaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat---gggttgtg 26906833  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
     | |  ||||||| ||||||||  |  | | | ||||| || || ||||| |||||||||||||||||||| ||||| |||||||| || |||| |||||    
T  26906832 tctctctctgatagcaacatattcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgag 26906733  T
Q  210 aaactcta 217  Q
    ||||||||    
T  26906732 aaactcta 26906725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 135925 - 136141
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||| |||| |||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| | | || |||   || | ||     
T  135925 aacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactat---tggtagtg 136021  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
    |||| ||| |||| |||||||  || |||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||| |||||||   |||    
T  136022 ccactgtcagatatcaacatactaatgagtctctctttatcatccttccttccaaccataacagattcatttaccattgaacttgaaggcgttcttagag 136121  T
Q  210 aaactctacctcttacagtt 229  Q
    ||||||| || || ||||||    
T  136122 aaactctcccgctcacagtt 136141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 145976 - 146192
Alignment:
Q  10 aactttttcatcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatatctgctggta 109  Q
    ||||| || |||||| |||| |||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| | | || |||   || | ||     
T  145976 aacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactat---tggtagtg 146072  T
Q  110 ccacagtctgataccaacatatcaaggagtctatctttatcttcattccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgag 209  Q
    |||| ||| |||| |||||||  || |||||| |||||||| || ||||| || ||||| ||||||||||| ||||  |||||||| |||||||   |||    
T  146073 ccactgtcagatatcaacatactaatgagtctctctttatcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttcttagag 146172  T
Q  210 aaactctacctcttacagtt 229  Q
    ||||||| || || ||||||    
T  146173 aaactctcccgctcacagtt 146192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 49987 - 50045
Alignment:
Q  155 ttccttcccaccatgacagattcattcaccaccgaacttgacggcgttccacgagaaac 213  Q
    ||||| |||||||||||||||||||| ||||| |||||||| || |||| ||| |||||    
T  49987 ttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaac 50045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 31679779 - 31679845
Alignment:
Q  19 atcattgtaaacaagttgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcaacaaca 85  Q
    ||||||||||| |||||| || ||||  ||||||||||| |||||||| || ||||||| |||||||    
T  31679779 atcattgtaaagaagttgagctagggctgttttaccgacacctcccatgccgaaaattgaaacaaca 31679845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University