View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_33 (Length: 350)
Name: NF6210_high_33
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 8956589 - 8956912
Alignment:
| Q |
20 |
tcaccttcttttcatcacaatagctcaatctgataactatatcatccacatggacaaatcagccatgcccaaagtattcacaacccaccacacatggtac |
119 |
Q |
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| T |
8956589 |
tcaccttcttttcatcacaatagctcaatctgataactatatcatccacatggacaaagcagccatgcccaaagtattcacaacccaccacacatggtac |
8956688 |
T |
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| Q |
120 |
ctatcaactctttcttctgcattagaaaatccacaactcacaaaatcaagcaataatctcaactctctattttcttccaagttaatttacacctacacac |
219 |
Q |
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| T |
8956689 |
ctatcaactctttcctcagcattagaaaatccacaactcacaacatcaagcaataatctcaactctctattttcttccaagttaatttacacctacacac |
8956788 |
T |
|
| Q |
220 |
atgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttcatccataaaagattcacacatgaa |
319 |
Q |
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| T |
8956789 |
atgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttcatccataaaagattcacacatgaa |
8956888 |
T |
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| Q |
320 |
actcgacacaacacattcatctca |
343 |
Q |
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| T |
8956889 |
actcgacacaacacattcacctca |
8956912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 8973195 - 8973262
Alignment:
| Q |
228 |
aatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttc |
295 |
Q |
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| T |
8973195 |
aatggttttagtgctaatctatcacctgaagagcatgaagctctcaaaacttccccagggtacatttc |
8973262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 34964241 - 34963929
Alignment:
| Q |
28 |
ttttcatcacaatagctcaatctgataactatatcatccacatggacaaatcagccatgcccaaagtattcacaacccaccacacatggtacctatcaac |
127 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||| |||| || ||||||||||| | || || |
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| T |
34964241 |
ttttcatcacattagctcaatatgataactatatcatccacatgaacttatcagccatgcccaaagcattctcaactcatcacacatggtatcattccac |
34964142 |
T |
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| Q |
128 |
tctttcttctgcattagaaaatccacaactcacaaaatcaagcaataatctcaactctctattttcttccaagttaatttacacctacacacatgtcatg |
227 |
Q |
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|||||| ||||||||||| || || ||||||||| ||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |
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| T |
34964141 |
tctttcctctgcattagagaaccctcaactcacag---caaccaataatctcaactctccaatttcttctaagttaatttacacctacacacatgtcata |
34964045 |
T |
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| Q |
228 |
aatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttcatccataaaagattcacacatgaaactcgaca |
327 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||| ||||| |||||||||| | |||| |
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| T |
34964044 |
aatggttttagtgctaacttatcaccaaaagaacatgaatccctcaaaaatgcaccaggttacatttcatctataagagatttacacatgaaaatggaca |
34963945 |
T |
|
| Q |
328 |
caacacattcatctca |
343 |
Q |
| |
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||||||||||| |||| |
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| T |
34963944 |
caacacattcacctca |
34963929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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