View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_34 (Length: 349)
Name: NF6210_high_34
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 52457029 - 52457359
Alignment:
| Q |
1 |
tactacctgtcttgaggggaaaatgacgtcgaaagacatggttgacaatgcattagaacaaactggaaggtcgttggtcatgtcaaatgttttgacttat |
100 |
Q |
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| T |
52457029 |
tactacctgtcttgaggggaaaatggcgtcgaaagacatggttgacaatgcattagaacaaagtggaaggtcgttagtcatgtcaaatgttctgacttat |
52457128 |
T |
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| Q |
101 |
ggcgcaactttgcatgccctcaatcaataatatgttctttatgaggatttggactctggtacgcatacacgactacttgatggttatatgatgtgttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52457129 |
ggcgcaactttgcatgccctcaatcaataatatgttctttataaggatttggactctggtatgcatacacgactacttgatggttatatgatgtgttctt |
52457228 |
T |
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| Q |
201 |
tataagagattgaaaccttgaaataattttccaccaaccttatttcatcaaccattttattagcatgtcgtagatttgccaccttacggtgatgtgggtt |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52457229 |
tataagagatcgaaaccttgaaataattttccaccaaccttatttcatcaaccattttattagcatgtcgtagatttgccaccttacggtgatgtgggtt |
52457328 |
T |
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| Q |
301 |
cgaattctccttacgagattttgtatggaat |
331 |
Q |
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||||||||||||||| ||||||||||||||| |
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| T |
52457329 |
cgaattctccttacgggattttgtatggaat |
52457359 |
T |
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