View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_36 (Length: 336)
Name: NF6210_high_36
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_36 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: scaffold0102 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 34301 - 33993
Alignment:
| Q |
18 |
cttttaactttagagatgcaacggtctacatctttgtttgtgttgaggttggagatacagcggtctatatatctacttcttctgaactaggtgttgcagc |
117 |
Q |
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| T |
34301 |
cttttgactttagagatgcagcggtctacatctttgtttgtgttgaggttgttgatacagcagtctatatatctgcttcttctgaactaggagttacagc |
34202 |
T |
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| Q |
118 |
ggtctacatctcctcttttgagataactttttcttctatgcgctttggattcagaactaactctctc--cttcacagcactatcaattgctttactactc |
215 |
Q |
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|||||||||||||||||||||| |||||||||| ||| || |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
34201 |
ggtctacatctcctcttttgagctaactttttcctctgtgggctttggattcacaactaactctctctccttctcagcactatcaattgctttactactc |
34102 |
T |
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| Q |
216 |
ttgagccctatgacattgatctgctaaatcttattttccttagtagctgcaatctccgtctgactaggtagaaatccagcaggtctttcaaatatagctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |
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| T |
34101 |
ttgagccctatgacattgatctgctaaatcttattttccttagtagctgcaatctccgtctaactaggtagaaacccagcaggtctttcaaatatagttt |
34002 |
T |
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| Q |
316 |
tgtggattt |
324 |
Q |
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||||||||| |
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| T |
34001 |
tgtggattt |
33993 |
T |
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