View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_37 (Length: 335)
Name: NF6210_high_37
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 8637797 - 8637651
Alignment:
| Q |
77 |
ataaaagcatgcatcttactaaaggaaatagacaacacactataattaaattaacagtcctgaaatacgtgatgtttggaaaagtataccannnnnnnag |
176 |
Q |
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| T |
8637797 |
ataaaagcatgcatcttactgaaggaaatagacaacacactataattaaattagcagtcctgaaatacgtgatgtttggaaaagtatgccatttttttag |
8637698 |
T |
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| Q |
177 |
caaatacaattctgaaatacatgagatcttgtctttctttaaaggtt |
223 |
Q |
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| T |
8637697 |
caaatacaattctgaaatacatgagatcttgtctttctttaaaggtt |
8637651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 8637832 - 8637783
Alignment:
| Q |
12 |
agagatgaaaggaacactaaaccaagacatgcataataaaagcatgcatc |
61 |
Q |
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| T |
8637832 |
agagatgaaaggaacactaaaccaagacatgcataataaaagcatgcatc |
8637783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 8637596 - 8637555
Alignment:
| Q |
278 |
cactgaagataaagagaatttgggtattagcagaatgtaatc |
319 |
Q |
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| T |
8637596 |
cactgaagataaagagaatttaggtattagcagaatgtaatc |
8637555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 6756094 - 6755952
Alignment:
| Q |
77 |
ataaaagcatgcatcttactaaaggaaatagacaacacactataattaaattaacagtcctgaaatacgtgatgtttggaaaagtataccannnnnnnag |
176 |
Q |
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|||||| ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||| || || |
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| T |
6756094 |
ataaaaacatgcatcttatcaaaagaaataaacaacacacta--attaaattaacagtcctaaaatatatgatgtttggaaaactatcccttttttttag |
6755997 |
T |
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| Q |
177 |
caaa--tacaattctgaaatacatgagatcttgtctttctttaaa |
219 |
Q |
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| T |
6755996 |
caaatttacaattctgaaatacatgagatcatgtatttctttaaa |
6755952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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