View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_high_4 (Length: 567)

Name: NF6210_high_4
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_high_4
NF6210_high_4
[»] chr8 (3 HSPs)
chr8 (1-567)||(33349895-33350462)
chr8 (108-166)||(25988230-25988288)
chr8 (45-182)||(30122939-30123075)
[»] chr7 (6 HSPs)
chr7 (1-182)||(25992363-25992544)
chr7 (40-171)||(5057691-5057822)
chr7 (80-166)||(7228046-7228132)
chr7 (70-160)||(16301924-16302014)
chr7 (10-62)||(8858929-8858981)
chr7 (62-138)||(16252516-16252592)
[»] chr4 (4 HSPs)
chr4 (1-172)||(22271131-22271302)
chr4 (80-166)||(27304203-27304289)
chr4 (71-172)||(2328940-2329041)
chr4 (77-184)||(38811589-38811699)
[»] chr2 (4 HSPs)
chr2 (1-164)||(5369391-5369554)
chr2 (97-166)||(33856530-33856599)
chr2 (46-165)||(25677461-25677580)
chr2 (46-166)||(24927836-24927956)
[»] chr5 (2 HSPs)
chr5 (1-166)||(32578411-32578575)
chr5 (44-183)||(27892779-27892918)
[»] chr1 (5 HSPs)
chr1 (31-166)||(19883632-19883767)
chr1 (35-102)||(2368797-2368864)
chr1 (40-90)||(2372502-2372552)
chr1 (40-90)||(2383519-2383569)
chr1 (62-183)||(17595872-17595993)
[»] chr6 (1 HSPs)
chr6 (68-171)||(6633781-6633884)
[»] chr3 (2 HSPs)
chr3 (113-171)||(14073198-14073256)
chr3 (102-166)||(4288324-4288388)


Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 33349895 - 33350462
Alignment:
Q  1 tcatcagaaatccatgacaagcattagtgattcaaaagtattaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  33349895 tcatcagaaatccatgacaagcattagtgattcaaaagtattaaataacactataaactactaaaattataaaatcctaaaatagtca-tgataagatgt 33349993  T
Q  101 cttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaactgatttgctagttatcatggtttccttcgttctca 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||    
T  33349994 cttagccaatgcaatcacttaatttcttgtccattatgagagctaagtgcaatgtgataaccaactaatttgccagttatcatggtttccttcgttccca 33350093  T
Q  201 tgtgtgtaattgtctttt-ttccatttctttcatactttcttgtcggagtatgagttgcaatttggctcctctgtcaacacaactcattcaccaccatag 299  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  33350094 tgtgtgtaattgtctttttttccatttctttcatactttcttgtcggagtatgatttgcaatttgcctcctccgtcaacacaactcattcaccaccatag 33350193  T
Q  300 cttgctcctttcctctctttgcagcgattattctctctctaaagggggcttggatgcccatatctcagccacaattgctacccacgttacgacaatttca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33350194 cttgctcctttcctctctttgcagcgattattctctctctaaagggggcttggatgcccatatctcagccacaatcgctacccacgttacgacaatttca 33350293  T
Q  400 ccttctattaaccgtcatccataggcatcgatccatattgtttttccgacgacaatcatcacacatcctcactcca-agtacgacatacatagcaaagtt 498  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||    
T  33350294 ccttctattaaccgtcatccataggcaccgatccatattgtttttccgacgacaatcatcacacatcctcactccagtttacgacatatatagcaaagtt 33350393  T
Q  499 tcaactnnnnnnntacacatagcaaaaattaaaccatgaagaaaaccttacatgatccatgccatttgc 567  Q
    ||||||       |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33350394 tcaactaaaaaaatacagatagcaaaaattaaaccatgcagaaaaccttacatgatccatgccatttgc 33350462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 25988288 - 25988230
Alignment:
Q  108 aatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaact 166  Q
    |||||| ||||| ||||||| || |||||||| |||| |||||||||||||||| ||||    
T  25988288 aatgcattcactcaatttcttgttcattatgaaagctaagtgcaacgtgataacaaact 25988230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 30122939 - 30123075
Alignment:
Q  45 ataacactataaactact-aaaattataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagc 143  Q
    ||||||||| |||||| | |||| |||||||||||||| ||  ||||||| |||||| |||| | || || | |||||||||||  | ||||||| | |     
T  30122939 ataacactaaaaactaattaaaactataaaatcctaaa-tatgcactaattagatgttttaggccatacatttacttaatttctcattcattatggg-ga 30123036  T
Q  144 tgagtgcaacgtgataaccaactgatttgctagttatca 182  Q
    | ||||||||||||||||||| |  ||||||||||||||    
T  30123037 taagtgcaacgtgataaccaattactttgctagttatca 30123075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 25992363 - 25992544
Alignment:
Q  1 tcatcagaaatccatgacaagcattagtgattcaaaagtattaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgt 100  Q
    |||||| | ||||||||||||||||| | ||||||||  |||||||||||||| |||| ||||||| ||||| |||||||||||||||| ||| ||||||    
T  25992363 tcatcaaacatccatgacaagcattactaattcaaaatgattaaataacactaaaaacaactaaaactataacatcctaaaatagtcaccaattagatgt 25992462  T
Q  101 cttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaactgatttgctagttatca 182  Q
    ||||| ||||||||||||| ||||||| || ||||    ||| | ||||||| ||||||||||||| ||||| | |||||||    
T  25992463 cttaggcaatgcaatcactaaatttctcgttcattcaaggagttaagtgcaatgtgataaccaactaatttgttggttatca 25992544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 5057691 - 5057822
Alignment:
Q  40 attaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatga 139  Q
    ||||| ||||| || |||| ||||||||||||||||| ||||||||||||| || ||||||||||| || || ||||||| ||||  | |||||||||||    
T  5057691 attaattaacattaaaaacaactaaaattataaaatcttaaaatagtcactgattagatgtcttaggcattgtaatcactcaattatttgtccattatga 5057790  T
Q  140 gagctgagtgcaacgtgataaccaactgattt 171  Q
    ||||| ||||||||||||||||||||| ||||    
T  5057791 gagctaagtgcaacgtgataaccaacttattt 5057822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 7228132 - 7228046
Alignment:
Q  80 aaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaact 166  Q
    |||||| |||| || |||| |||||| |||| |||||||| ||||||| || ||||||  ||||| |||||||||||||||||||||    
T  7228132 aaataggcactgattagatctcttaggcaattcaatcactcaatttcttgttcattataggagctaagtgcaacgtgataaccaact 7228046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 16301924 - 16302014
Alignment:
Q  70 taaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataa 160  Q
    |||||||||||||||  |||| || | |||| | || || |||||||||| |||| || |||||||||| | ||| |||||||||||||||    
T  16301924 taaaatcctaaaatatgcactgattatatgtttaaggcattgcaatcactcaattacttgtccattatgggggctaagtgcaacgtgataa 16302014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 8858981 - 8858929
Alignment:
Q  10 atccatgacaagcattagtgattcaaaagtattaaataacactataaactact 62  Q
    |||||| |||| ||||| ||||||||||  |||||||||||||| ||||||||    
T  8858981 atccataacaaacattattgattcaaaatgattaaataacactaaaaactact 8858929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 16252592 - 16252516
Alignment:
Q  62 taaaattataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatg 138  Q
    ||||| |||||||||||||||||| |||| ||||||||| | ||  | |||||||||| |||| ||  |||||||||    
T  16252592 taaaactataaaatcctaaaatagacactgataagatgtttaaggtattgcaatcactaaattacttttccattatg 16252516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 22271131 - 22271302
Alignment:
Q  1 tcatcagaaatccatgacaagcattagtgattcaaaagtattaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgt 100  Q
    |||||| | |||||| |||| ||||| |  |||||||  |||||||||||||| |||  ||||||| ||||||||||||||||||||||| || | ||||    
T  22271131 tcatcaaacatccataacaaacattattagttcaaaatgattaaataacactaaaaataactaaaactataaaatcctaaaatagtcactgattatatgt 22271230  T
Q  101 cttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaactgatttg 172  Q
    ||||| || |||||||||||||||||| |||||| | ||||||| ||||||| || |||||| ||| |||||    
T  22271231 cttagacagtgcaatcacttaatttcttgtccatcacgagagctaagtgcaatgtaataaccgactaatttg 22271302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 27304289 - 27304203
Alignment:
Q  80 aaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaact 166  Q
    |||||| ||||||| ||| |||| || ||||||||||||| |||||||  ||||||||| ||||| |||||||| |||||| |||||    
T  27304289 aaataggcactaattagacgtctcaggcaatgcaatcactcaatttcttatccattatgggagctaagtgcaacatgataatcaact 27304203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 2328940 - 2329041
Alignment:
Q  71 aaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaactgatt 170  Q
    ||||||||||||||| || | || |||||| | || || |||||||||| |||| || || | ||||| | ||| ||||||||||||||||||||| |||    
T  2328940 aaaatcctaaaataggcaatgattagatgtttaaggcattgcaatcactcaattacttgtacgttatgtgggctaagtgcaacgtgataaccaacttatt 2329039  T
Q  171 tg 172  Q
    ||    
T  2329040 tg 2329041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 38811699 - 38811589
Alignment:
Q  77 ctaaaatagtcactaataagatgtcttagccaatgcaat---cacttaatttctagtccattatgagagctgagtgcaacgtgataaccaactgatttgc 173  Q
    ||||||||| |||| || |||||| | || |||||||||   |||| |||| || |||||||| | | ||| ||||||||||||||||||||| ||| ||    
T  38811699 ctaaaataggcactgattagatgtttaagacaatgcaataatcactcaattacttgtccattacgggggctaagtgcaacgtgataaccaacttattagc 38811600  T
Q  174 tagttatcatg 184  Q
      |||||||||    
T  38811599 cggttatcatg 38811589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 5369554 - 5369391
Alignment:
Q  1 tcatcagaaatccatgacaagcattagtgattcaaaagtattaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgt 100  Q
    |||||| | ||||||||||||||||| |  |||||||| ||||  ||| |||| |||| ||||||| ||||||||| | ||||||||| | || ||||||    
T  5369554 tcatcaaacatccatgacaagcattactagttcaaaaggattacttaatactaaaaacaactaaaactataaaatcattaaatagtcattgattagatgt 5369455  T
Q  101 cttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaa 164  Q
    ||||| ||||||||||| | | ||| | ||||||||| |||| | |||||||||||||||||||    
T  5369454 cttaggcaatgcaatcattaatttttttgtccattataagagttaagtgcaacgtgataaccaa 5369391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 33856530 - 33856599
Alignment:
Q  97 atgtcttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaact 166  Q
    ||||||||| ||||||||||| | ||||| | || ||||||| ||| | |||||||||||||||||||||    
T  33856530 atgtcttaggcaatgcaatcattcaatttattgttcattatgggagttaagtgcaacgtgataaccaact 33856599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 25677580 - 25677461
Alignment:
Q  46 taacactataaactact-aaaattataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagct 144  Q
    |||||||| |||||| | |||| |||||||||||||| ||| |||  || |||||||||||  |||| ||||||| ||||||| || ||||||  ||| |    
T  25677580 taacactaaaaactaattaaaactataaaatcctaaa-taggcaccgattagatgtcttaggtaatgaaatcactcaatttcttgttcattataggagtt 25677482  T
Q  145 gagtgcaacgtgataaccaac 165  Q
     |||||||| |||||||||||    
T  25677481 aagtgcaacatgataaccaac 25677461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 24927956 - 24927836
Alignment:
Q  46 taacactataaactact-aaaattataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagct 144  Q
    |||||||| |||||| | |||| |||||||||||||| ||| |||  || |||||||||||  |||| ||||||| ||||||  || |||||   |||||    
T  24927956 taacactaaaaactaattaaaactataaaatcctaaa-taggcaccgattagatgtcttaggtaatgaaatcactcaatttcctgttcattacaggagct 24927858  T
Q  145 gagtgcaacgtgataaccaact 166  Q
     |||||||| ||||||||||||    
T  24927857 aagtgcaacatgataaccaact 24927836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 32578575 - 32578411
Alignment:
Q  1 tcatcagaaatccatgacaagcattagtgattcaaaagtattaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgt 100  Q
    |||||| | ||||||||||||||||| |  |||||||| ||||| |||||||| |||  | | |||||||||||| || |||||  |||| ||  |||||    
T  32578575 tcatcaaacatccatgacaagcattactagttcaaaagaattaattaacactaaaaaaaaattaaattataaaat-cttaaatatgcacttatttgatgt 32578477  T
Q  101 cttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaact 166  Q
    ||||| ||||||||||||| ||||  |   |||||||| ||||| |||||||||||||||||||||    
T  32578476 cttaggcaatgcaatcactcaattctttacccattatgggagctaagtgcaacgtgataaccaact 32578411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 27892918 - 27892779
Alignment:
Q  44 aataacactataaactactaaaat-tataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagag 142  Q
    |||||||||| |||| ||| |||| |||||||| ||||| ||| |||| || |||| |||||| |||||| |||| | ||||||| ||||||||| ||||    
T  27892918 aataacactaaaaacaacttaaatctataaaatactaaa-tagacacttattagatatcttaggcaatgcgatcaatcaatttcttgtccattattagag 27892820  T
Q  143 ctgagtgcaacgtgataaccaactgatttgctagttatcat 183  Q
     | |||||||||||||||||||||  || | ||||||||||    
T  27892819 ttaagtgcaacgtgataaccaactatttggttagttatcat 27892779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 19883632 - 19883767
Alignment:
Q  31 ttcaaaagtattaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagt 130  Q
    |||||| | |||| ||||||||| | || |||| |  ||||| ||| ||||||||||||| || ||||||||||  |||||||||||||  |||||| ||    
T  19883632 ttcaaatggattacataacactaaagacaactacacctataagatcttaaaatagtcactgattagatgtcttaagcaatgcaatcactcgatttcttgt 19883731  T
Q  131 ccattatgagagctgagtgcaacgtgataaccaact 166  Q
    || ||||| ||| | |||||||||||||||||||||    
T  19883732 cccttatgggagttaagtgcaacgtgataaccaact 19883767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 2368864 - 2368797
Alignment:
Q  35 aaagtattaaataacactataaactactaaaattataaaatcctaaaatagtcactaataagatgtct 102  Q
    |||| ||||||||||| || |||| ||||||| ||||||||| |||||||||||||||| ||| ||||    
T  2368864 aaaggattaaataacattaaaaacaactaaaactataaaatcttaaaatagtcactaattagacgtct 2368797  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 2372552 - 2372502
Alignment:
Q  40 attaaataacactataaactactaaaattataaaatcctaaaatagtcact 90  Q
    ||||||||||| || |||| ||||||| ||||||||| |||||||||||||    
T  2372552 attaaataacattaaaaacaactaaaactataaaatcttaaaatagtcact 2372502  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 2383519 - 2383569
Alignment:
Q  40 attaaataacactataaactactaaaattataaaatcctaaaatagtcact 90  Q
    ||||||||||| || |||| ||||||| ||||||||| |||||||||||||    
T  2383519 attaaataacattaaaaacaactaaaactataaaatcttaaaatagtcact 2383569  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 183
Target Start/End: Complemental strand, 17595993 - 17595872
Alignment:
Q  62 taaaattataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataac 161  Q
    ||||| |||||||||||||||||| || |  | ||||||   || |||| |||||||| |||  |||||| | ||| || | ||| ||||||||||||||    
T  17595993 taaaactataaaatcctaaaatagacattgtttagatgttgaaggcaatacaatcactcaataactagtcaaatataagggttgaatgcaacgtgataac 17595894  T
Q  162 caactgatttgctagttatcat 183  Q
    ||||| ||||| | ||||||||    
T  17595893 caacttatttgttggttatcat 17595872  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 6633781 - 6633884
Alignment:
Q  68 tataaaatcctaaaatagtcactaataagatgtcttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaactg 167  Q
    |||||||||||||||||  |||| || |||||| | || ||||||| ||| | |||| || |||||||||| | ||| |||||||||||||||||||||     
T  6633781 tataaaatcctaaaataagcactgattagatgtttaaggcaatgcattcattcaattacttgtccattatgggggctaagtgcaacgtgataaccaactt 6633880  T
Q  168 attt 171  Q
    ||||    
T  6633881 attt 6633884  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 14073198 - 14073256
Alignment:
Q  113 aatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaactgattt 171  Q
    |||||||||||| || |||||||||| | ||| ||||||||||||||||||||| ||||    
T  14073198 aatcacttaattacttgtccattatgggggctaagtgcaacgtgataaccaacttattt 14073256  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 4288324 - 4288388
Alignment:
Q  102 ttagccaatgcaatcacttaatttctagtccattatgagagctgagtgcaacgtgataaccaact 166  Q
    |||| ||||||| ||||| | ||||| || ||||||| ||| | |||||||||||||||||||||    
T  4288324 ttaggcaatgcattcactcagtttcttgttcattatgggagataagtgcaacgtgataaccaact 4288388  T

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