View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_high_50 (Length: 284)

Name: NF6210_high_50
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_high_50
NF6210_high_50
[»] chr2 (10 HSPs)
chr2 (1-268)||(5593152-5593419)
chr2 (1-254)||(5586919-5587169)
chr2 (14-261)||(5576562-5576807)
chr2 (27-254)||(5573414-5573638)
chr2 (176-268)||(5582835-5582927)
chr2 (33-125)||(12064683-12064775)
chr2 (16-83)||(12059314-12059381)
chr2 (33-89)||(12051887-12051943)
chr2 (13-73)||(5582732-5582793)
chr2 (145-261)||(12051714-12051830)
[»] chr8 (1 HSPs)
chr8 (149-212)||(36357988-36358051)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 5593152 - 5593419
Alignment:
Q  1 aacacttcatgtttcataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5593152 aacacttcatgtttcataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcggg 5593251  T
Q  101 aagtcgatcccgtaaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5593252 aagtcgatcccgtaaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagac 5593351  T
Q  201 aaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaattggaaac 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5593352 aaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaataggaaac 5593419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 5586919 - 5587169
Alignment:
Q  1 aacacttcatgtttcataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcggg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||     
T  5586919 aacacttcatgtttcataatatggttaagttaaaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcgga 5587018  T
Q  101 aagtcgatcccgtaaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagac 200  Q
    |||||||| || || ||||||||||| ||| ||| ||||   | ||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||    
T  5587019 aagtcgattccatagggattgtaattagattttgcagag---gtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagac 5587115  T
Q  201 aaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaaga 254  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  5587116 aaggcacttgggatttcccattgacacattgttgcaaatagtttgcagaaaaga 5587169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 5576562 - 5576807
Alignment:
Q  14 tcataatatggataagttaaaag-aatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcgatcccg 112  Q
    ||||||||| |||||||| || | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||     
T  5576562 tcataatatagataagttgaacggaatgctacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattcca 5576661  T
Q  113 taaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg 212  Q
    ||||| |||||||| ||| ||| ||||   |  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||||||    
T  5576662 taaggtttgtaattagattttgcagag---gtgggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggg 5576758  T
Q  213 atttcccattgacagattgctgcaaatagtttgcagacaagagaagaat 261  Q
    |||| ||||||||| |||| ||||||||||||||||| |||| ||||||    
T  5576759 attttccattgacaaattgttgcaaatagtttgcagaaaagataagaat 5576807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 5573414 - 5573638
Alignment:
Q  27 aagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcgatcccgtaaggattgtaatt 126  Q
    ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| || || ||||| ||||||||    
T  5573414 aagttgaaagaatgttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaatt 5573513  T
Q  127 tgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttgggatttcccattgaca 226  Q
     ||| ||| |||| |||   ||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||    
T  5573514 agattttgcagaggtag---gaaggttattgttgtttccactatcagataaagaatctccaaagataaatacacaaggcacttgagatttcccattgaca 5573610  T
Q  227 gattgctgcaaatagtttgcagacaaga 254  Q
     |||| |  |||||||||||||||||||    
T  5573611 cattgtttaaaatagtttgcagacaaga 5573638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 5582835 - 5582927
Alignment:
Q  176 aaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaattggaaac 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5582835 aaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaataggaaac 5582927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 12064775 - 12064683
Alignment:
Q  33 aaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcgatcccgtaaggattgtaat 125  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  || |||||| |||| || || ||||| |||||||    
T  12064775 aaagaatgttacttattatgtcaattgtagttcgaccattggtaaatcttccggttgttccgatcggggagtcaattccataaggtttgtaat 12064683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 12059381 - 12059314
Alignment:
Q  16 ataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttc 83  Q
    ||||||| | ||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  12059381 ataatatagttaaattgaaagaatgttacttattatgtcaattgcagttcgaccattggtaaatcttc 12059314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 12051943 - 12051887
Alignment:
Q  33 aaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttg 89  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  12051943 aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttg 12051887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 5582732 - 5582793
Alignment:
Q  13 ttcataatatggataagttaaaagaat-gttacttattatgtcaattgtagttcgaccgttg 73  Q
    |||||||||| ||||| || ||||||| |||||||||||||||||||| |||||||||||||    
T  5582732 ttcataatatagataaattgaaagaattgttacttattatgtcaattgcagttcgaccgttg 5582793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 12051830 - 12051714
Alignment:
Q  145 aggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacagattgctgcaaatagttt 244  Q
    ||||||||| ||||||||| ||| |||| ||||||| || ||||||||||| |||| ||| |||||  ||||| ||| ||||   || || |||||||||    
T  12051830 aggaaggttattgttgttttcactatcatataaagagtccccaaagataaacagactaggtacttgatatttctcatagacactgtgttgtaaatagttt 12051731  T
Q  245 gcagacaagagaagaat 261  Q
    || |||| || ||||||    
T  12051730 gcggacatgaaaagaat 12051714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 36357988 - 36358051
Alignment:
Q  149 aggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg 212  Q
    ||||| |||||||||||||  || ||||||||||||||||| || |||||||| || |||||||    
T  36357988 aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg 36358051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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