View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_51 (Length: 279)
Name: NF6210_high_51
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_51 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 40376575 - 40376823
Alignment:
| Q |
13 |
aatattatccacaatagaaaatatggattgtccaatacttgtgatctttgatgatgttcggacaaaatttgacctacaagatgtaggaattccttgcaat |
112 |
Q |
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| T |
40376575 |
aatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatgatgttcgggcaagatttgacctacgggatgtaggaattccttgtact |
40376674 |
T |
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| Q |
113 |
agtaatcaatgcaaggtccttttgaccacacgtcgcaaaaaatattgtgacttaatgcattgtcaaagggagattcaacttcattccttatctaccgagg |
212 |
Q |
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||||||| ||||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||| |
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| T |
40376675 |
agtaatctatgcaaggttcttttgaccgcacgtagccaaaaatattgtgacttaatgcattgtcaaagggagattttacttgattcattatctacagagg |
40376774 |
T |
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| Q |
213 |
aagcttcgactttgtttgaaaaacattcaggcattctcgacgaggatca |
261 |
Q |
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| T |
40376775 |
aagcttcgactttgtttgaaaaacattcaggcattctcgaagaggatca |
40376823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 40333542 - 40333790
Alignment:
| Q |
13 |
aatattatccacaatagaaaatatggattgtccaatacttgtgatctttgatgatgttcggacaaaatttgacctacaagatgtaggaattccttgcaat |
112 |
Q |
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| T |
40333542 |
aatattatccacaatagaagatatggatcgtccaatacttgtgatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttgtaat |
40333641 |
T |
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| Q |
113 |
agtaatcaatgcaaggtccttttgaccacacgtcgcaaaaaatattgtgacttaatgcattgtcaaagggagattcaacttcattccttatctaccgagg |
212 |
Q |
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| T |
40333642 |
agtaatctatgcaaggttcttttgaccgcacgtcgccaaaaatattgcgacttaatgcactgtcaaagggagattctacttgatccattatctacagagg |
40333741 |
T |
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| Q |
213 |
aagcttcgactttgtttgaaaaacattcaggcattctcgacgaggatca |
261 |
Q |
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| T |
40333742 |
aagcttcgactttgtttgaaaaacattcgggaattctagaagaggatca |
40333790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 40386816 - 40387068
Alignment:
| Q |
9 |
gaagaatattatccacaatagaaaatatggattgtccaatacttgtgatctttgatgatgttcggacaaaatttgacctacaagatgtaggaattccttg |
108 |
Q |
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| T |
40386816 |
gaagaatattatccacaatagaagatatggatcgtccaatacttgttatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttc |
40386915 |
T |
|
| Q |
109 |
caatagtaatcaatgcaaggtccttttgaccacacgtcgcaaaaaatattgtgacttaatgcattgtcaaagggagattcaacttcattccttatctacc |
208 |
Q |
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| T |
40386916 |
taatagtaatcgatgcaaggtacttttgaccgcacgtcgccaaaaatattgtgacttagtttactgtcaaaggaagattctacttgatcccttatctaca |
40387015 |
T |
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| Q |
209 |
gaggaagcttcgactttgtttgaaaaacattcaggcattctcgacgaggatca |
261 |
Q |
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| T |
40387016 |
gaggaagcttcgacgttgtttgaaaaatattcaggcattctcgaagaggatca |
40387068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 40325998 - 40326210
Alignment:
| Q |
31 |
aaatatggattgtccaatacttgtgatctttgatgatgtt-cggacaaaatttgacctacaagatgtaggaattccttgcaatagtaatcaatgcaaggt |
129 |
Q |
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|||||||||| | | ||| ||||||||||| ||||||||| |||| ||| |||| | | || | ||||| |||||||| |||||||||| ||||||||| |
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| T |
40325998 |
aaatatggatcgccaaattcttgtgatcttggatgatgtttcgga-aaatcttgatccagaaaaggtaggcattccttgtaatagtaatcgatgcaaggt |
40326096 |
T |
|
| Q |
130 |
ccttttgaccacacgtcgcaaaaaatattgtgacttaatgcattgtcaaagggagattcaacttcattccttatctaccgaggaagcttcgactttgttt |
229 |
Q |
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||||||||||||| ||||| || || ||||||| || || |||||||||||||||||||||||| | | ||||| || |||||||||| ||||||||| |
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| T |
40326097 |
ccttttgaccacatgtcgccaacaagattgtgagtttatacattgtcaaagggagattcaacttagtcctttatccacagaggaagcttggactttgttc |
40326196 |
T |
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| Q |
230 |
gaaaaacattcagg |
243 |
Q |
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||||||||||||| |
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| T |
40326197 |
aaaaaacattcagg |
40326210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 40277428 - 40277636
Alignment:
| Q |
20 |
tccacaatagaaaatatggattgtccaatacttgtgatctttgatgatgttcggacaaaatttgacctacaagatgtaggaattccttgcaatagtaatc |
119 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| | | |||||||| ||||| || ||||||| |
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| T |
40277428 |
tccaccatagaaaatatggatcgtccaatacttgtgatctttgatgatgttcgggaaaaattcaacccagaggatgtaggcattccactgaaaagtaatc |
40277527 |
T |
|
| Q |
120 |
aatgcaaggtccttttgaccacacgtcgcaaaaaatattgtgacttaatgcattgtcaaagggagattcaacttcattccttatctaccgaggaagcttc |
219 |
Q |
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||||||||||||||||| |||| | | || || | |||||||| ||| | ||||||||| ||||||||||| || |||||||||| |||||| ||| |
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| T |
40277528 |
gatgcaaggtccttttgatcacatttttccaacaagactgtgacttgatgtactgtcaaaggaagattcaacttaatcccttatctacagaggaaacttg |
40277627 |
T |
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| Q |
220 |
gactttgtt |
228 |
Q |
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||||||||| |
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| T |
40277628 |
gactttgtt |
40277636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 40598162 - 40597931
Alignment:
| Q |
9 |
gaagaatattatccacaatagaaaatatggattgtccaatacttgtgatctttgatgatgttcggacaaaatttgacctacaagatgtaggaattccttg |
108 |
Q |
| |
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|||||||||| || | |||||||| |||| | ||||||| || ||||| || |||||||||||| ||||||||| | | |||||||||| |||||||| |
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| T |
40598162 |
gaagaatattctcaagaatagaaagtatgagtcgtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttg |
40598063 |
T |
|
| Q |
109 |
caatagtaatcaatgcaaggtccttttgaccacacgtcgcaaaaaatattgtgacttaatgcattgtcaaagggagattcaacttcattccttatctacc |
208 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||| | | || || ||||||| || ||||| | ||||| | ||||||||| | ||||||||| |
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| T |
40598062 |
taatagtaatcgatgcaagatccttttgaccgcacttgcccaacaagattgtgaattgatgcactccaaaaggaatattcaacttggtcccttatctata |
40597963 |
T |
|
| Q |
209 |
gaggaagcttcgactttgtttgaaaaacattc |
240 |
Q |
| |
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|||||| ||| ||||||||| |||||||||| |
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| T |
40597962 |
gaggaatcttggactttgttccaaaaacattc |
40597931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 40257407 - 40257257
Alignment:
| Q |
96 |
taggaattccttgcaatagtaatcaatgcaaggtccttttgaccacacgtcgcaaaaaatattgtgacttaatgcattgtcaaagggagattcaacttca |
195 |
Q |
| |
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|||| |||||||| ||| ||||| ||||||||| ||| |||||||||||||| ||| | | |||| ||| ||| |||||||||| ||||||| ||| |
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| T |
40257407 |
taggtattccttgtaatggtaatagatgcaaggtgcttctgaccacacgtcgccaaagagaatgtgccttgatggattgtcaaagagagattccactagg |
40257308 |
T |
|
| Q |
196 |
ttccttatctaccgaggaagcttcgactttgtttgaaaaacattcaggcat |
246 |
Q |
| |
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| | ||||| | || ||||||| ||||||| | |||||||||||||||| |
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| T |
40257307 |
tccgttatccaaagatgaagcttggactttgctcaaaaaacattcaggcat |
40257257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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