View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_high_52 (Length: 276)
Name: NF6210_high_52
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 28435601 - 28435355
Alignment:
| Q |
19 |
aaatgtaagtaatgttgtagaataaactagcacaagagaaagtgaagtattagatgagtcaaacctcaagagtgagtgactgggtctccttgtcttctgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28435601 |
aaatgtaagtaatgttgtagaataaactagcacaagagaaagtgaagtattagatgtgtcaaacctcaagagtgagtgactgggtctccttgtcttctgc |
28435502 |
T |
|
| Q |
119 |
aatcaagtcaaattcctcattccaaattggattcaagttgttatcaataacctttgttttgactttaaacagtggtcgaatatgcacaactacgtaagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28435501 |
aatcaagtcaaattcctcattccaaattggattcaagttgttatcaataacctttgttttgactttaaacagtggtcgaatatgcacaactacgtaagga |
28435402 |
T |
|
| Q |
219 |
tcagacttcccaatcatttccatattctttagatcatttgctttcat |
265 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28435401 |
tcagacttcccaatcatttccatgttctttagatcatttgctttcat |
28435355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 12969379 - 12969549
Alignment:
| Q |
79 |
aaacctcaagagtgagtgactgggtctccttgtcttctgcaatcaagtcaaattcctcattccaaattggattcaagttgttatcaataacctttgtttt |
178 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||| | || ||||| |||||||||||||| | ||||||||| ||||| |
|
|
| T |
12969379 |
aaacctcaagaatgagtgactgggtctccttgtcttctgcaatcaactcaaatgtttgatcccaaacaggattcaagttgttgttaataaccttggtttt |
12969478 |
T |
|
| Q |
179 |
gactttaaacagtggtcgaatatgcacaactacgtaaggatcagacttcccaatcatttccatattcttta |
249 |
Q |
| |
|
|| || || | |||||||| | || ||| || ||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
12969479 |
aaccttgaataaaggtcgaatgtacagaacaacataaggatcagattttccaatcatttccatatttttta |
12969549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University