View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_56 (Length: 255)
Name: NF6210_high_56
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_56 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 1347583 - 1347327
Alignment:
| Q |
11 |
gtgagatgaatatttcctagatgtatacttggttttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctcc |
110 |
Q |
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| T |
1347583 |
gtgatatgaatatttcctagatatatacttggtgttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctcc |
1347484 |
T |
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| Q |
111 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
210 |
Q |
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| T |
1347483 |
ttatacaaatcaatggtccaacaattctagggtacacttaataactacgcgatatatgctttgcttagcatttttcgtaaccacgttgcttgaatagaac |
1347384 |
T |
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| Q |
211 |
aatttgtggctg------------tgtccatatttcttgcattcatgacactgcttt |
255 |
Q |
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| T |
1347383 |
aatttgttgctgatatatatattatgtccatatttcttgcattcatgacactgcttt |
1347327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 8675681 - 8675798
Alignment:
| Q |
77 |
atttgatggtttgaaaagtataggttttgtctccttatacaaatcaat-ggtccaacaattctagggtgcacttaataactacgcgatatatgcattgct |
175 |
Q |
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| T |
8675681 |
atttgacggtttgaacaatacaggcttggtctccttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgcaatatatgttttgct |
8675780 |
T |
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| Q |
176 |
tagcatttttcgtaacca |
193 |
Q |
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| T |
8675781 |
tagcattttctgtaacca |
8675798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 9619327 - 9619439
Alignment:
| Q |
111 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
210 |
Q |
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| T |
9619327 |
ttatacaaataaatggtcttctaattatagggtgcacttaataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaat |
9619426 |
T |
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| Q |
211 |
aatttgtggctgt |
223 |
Q |
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| T |
9619427 |
aatttgtggctgt |
9619439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 15785105 - 15785176
Alignment:
| Q |
86 |
tttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataacta |
157 |
Q |
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| T |
15785105 |
tttgaacaatataggtttggtctccttataccaattaatggtccaccaattctagggtgcacttgataacta |
15785176 |
T |
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