View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_high_57 (Length: 254)

Name: NF6210_high_57
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_high_57
NF6210_high_57
[»] chr5 (5 HSPs)
chr5 (13-244)||(2210711-2210928)
chr5 (186-244)||(2198575-2198633)
chr5 (138-167)||(37455439-37455468)
chr5 (110-138)||(34384702-34384730)
chr5 (139-167)||(41330455-41330483)
[»] chr8 (2 HSPs)
chr8 (110-167)||(1961372-1961427)
chr8 (139-167)||(16983484-16983512)
[»] chr1 (2 HSPs)
chr1 (110-139)||(22540504-22540533)
chr1 (139-167)||(30678973-30679001)
[»] chr7 (3 HSPs)
chr7 (139-167)||(31502526-31502554)
chr7 (139-167)||(44350864-44350892)
chr7 (139-167)||(46517381-46517409)
[»] chr4 (2 HSPs)
chr4 (110-138)||(19447273-19447301)
chr4 (139-167)||(50164485-50164513)
[»] chr3 (1 HSPs)
chr3 (139-167)||(29388656-29388684)
[»] chr2 (1 HSPs)
chr2 (102-138)||(38464304-38464340)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 2210711 - 2210928
Alignment:
Q  13 atgacttgagttgaatttattcgttccttatttaatcttcatttcnnnnnnnncttctt-ctatgtacataattagtagattgagtaagactagctatac 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||| ||    
T  2210711 atgacttgagttgaagttattcgttccttatttaatcttcatttcattt-----ttctttctatgtacataattagtagattgagtaagactagctacac 2210805  T
Q  112 tctcttttgaacactctctttaatactattgtg--agtctacactttgaaaattgaactagatcatattctgtttatttaaattattttaattttcgttg 209  Q
    |||||            ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210806 tctct------------ctttaatactattgtgtgagtctacactttgaaaattgaactagatcatattctgtttatttaaattattttaattttcgttg 2210893  T
Q  210 aatttttatgctaatttgcaaatcatagctctctg 244  Q
    |||||||||||||||||||||||||||||||||||    
T  2210894 aatttttatgctaatttgcaaatcatagctctctg 2210928  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 2198575 - 2198633
Alignment:
Q  186 tttaaattattttaattttcgttgaatttttatgctaatttgcaaatcatagctctctg 244  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  2198575 tttaatttaatttaattttcgtttaatttttatgctaattttcaaatcagagctctctg 2198633  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 37455468 - 37455439
Alignment:
Q  138 tattgtgagtctacactttgaaaattgaac 167  Q
    ||||||||||||||||||||||||||||||    
T  37455468 tattgtgagtctacactttgaaaattgaac 37455439  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 34384702 - 34384730
Alignment:
Q  110 actctcttttgaacactctctttaatact 138  Q
    |||||||||||||||||||||||||||||    
T  34384702 actctcttttgaacactctctttaatact 34384730  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 41330455 - 41330483
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  41330455 attgtgagtctacactttgaaaattgaac 41330483  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 1961427 - 1961372
Alignment:
Q  110 actctcttttgaacactctctttaatactattgtgagtctacactttgaaaattgaac 167  Q
    ||||||||||||||||||||| ||||  ||||||  ||||||||||||||||||||||    
T  1961427 actctcttttgaacactctctctaat--tattgttggtctacactttgaaaattgaac 1961372  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 16983512 - 16983484
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  16983512 attgtgagtctacactttgaaaattgaac 16983484  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 22540533 - 22540504
Alignment:
Q  110 actctcttttgaacactctctttaatacta 139  Q
    ||||||||||||||||||||||||||||||    
T  22540533 actctcttttgaacactctctttaatacta 22540504  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 30678973 - 30679001
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  30678973 attgtgagtctacactttgaaaattgaac 30679001  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 31502526 - 31502554
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  31502526 attgtgagtctacactttgaaaattgaac 31502554  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 44350864 - 44350892
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  44350864 attgtgagtctacactttgaaaattgaac 44350892  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 46517409 - 46517381
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  46517409 attgtgagtctacactttgaaaattgaac 46517381  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 19447301 - 19447273
Alignment:
Q  110 actctcttttgaacactctctttaatact 138  Q
    |||||||||||||||||||||||||||||    
T  19447301 actctcttttgaacactctctttaatact 19447273  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 50164513 - 50164485
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  50164513 attgtgagtctacactttgaaaattgaac 50164485  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 29388656 - 29388684
Alignment:
Q  139 attgtgagtctacactttgaaaattgaac 167  Q
    |||||||||||||||||||||||||||||    
T  29388656 attgtgagtctacactttgaaaattgaac 29388684  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 38464340 - 38464304
Alignment:
Q  102 ctagctatactctcttttgaacactctctttaatact 138  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  38464340 ctagcaatactctcttttgaacactctctctaatact 38464304  T

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