View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_65 (Length: 249)
Name: NF6210_high_65
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_65 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 35588819 - 35589010
Alignment:
| Q |
67 |
tgtaaagaaagtatgcagagagcaaattgatagaagtttttgttatgtatattgatgaataaatcacag---------ctgtacaagtattaacagaaaa |
157 |
Q |
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| T |
35588819 |
tgtaaagaaagtatgcagagagcaaattgatagaagtttttgttatgtatattgatgaataaatcacaggttaatatactgtacaagtattaacagaaaa |
35588918 |
T |
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| Q |
158 |
accaaactaagaggaagctaaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaaggatcagt |
249 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35588919 |
accaaactaagaggaagctgaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaaggaccagt |
35589010 |
T |
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