View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_high_67 (Length: 247)

Name: NF6210_high_67
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_high_67
NF6210_high_67
[»] chr2 (1 HSPs)
chr2 (64-237)||(33138362-33138535)
[»] chr1 (12 HSPs)
chr1 (68-184)||(34309702-34309818)
chr1 (108-178)||(45525799-45525869)
chr1 (136-184)||(35476643-35476691)
chr1 (108-184)||(45531903-45531979)
chr1 (107-197)||(35225226-35225316)
chr1 (115-184)||(35147654-35147723)
chr1 (111-184)||(35190668-35190741)
chr1 (108-197)||(35205237-35205326)
chr1 (107-184)||(35295648-35295725)
chr1 (138-184)||(35200237-35200283)
chr1 (108-197)||(35212279-35212368)
chr1 (137-184)||(35248593-35248640)
[»] chr3 (5 HSPs)
chr3 (64-197)||(23332078-23332211)
chr3 (64-215)||(19246719-19246870)
chr3 (64-184)||(899427-899547)
chr3 (64-181)||(17664312-17664433)
chr3 (137-179)||(53924118-53924160)
[»] chr7 (1 HSPs)
chr7 (102-184)||(38634919-38635001)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 33138362 - 33138535
Alignment:
Q  64 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 163  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33138362 acaggtttcctgaagttgctaagctttctcttttgtactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 33138461  T
Q  164 ttatctcgtgttcaagatgatctatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatg 237  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33138462 ttatctcgtgttcaagatgatccatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatg 33138535  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 34309818 - 34309702
Alignment:
Q  68 gtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttat 167  Q
    ||||||||||||||||||||||| |||| | ||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  34309818 gtttcctgaagttgctaagctttgtcttgtgtactcgcttgaaattcgtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttat 34309719  T
Q  168 ctcgtgttcaagatgat 184  Q
    |||||||||||||||||    
T  34309718 ctcgtgttcaagatgat 34309702  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 45525869 - 45525799
Alignment:
Q  108 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaa 178  Q
    |||||||||||||  ||||||| |||| ||||||| |||||||||||||| || |||||||||||||||||    
T  45525869 gaaattcgtgggatgattaacaatcttgccttgtctccaaatactcagtatgcagcttatctcgtgttcaa 45525799  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 35476691 - 35476643
Alignment:
Q  136 ccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35476691 ccttgtccccaaatactcagtatgcggcttatcttgtgttcaagatgat 35476643  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 45531979 - 45531903
Alignment:
Q  108 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    |||||||||||||  ||||||| |||| ||||||||||||||||||| || || |||||||| |||||||| |||||    
T  45531979 gaaattcgtgggatgattaacaatcttgccttgtccccaaatactcaatatgcagcttatcttgtgttcaaaatgat 45531903  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 35225316 - 35225226
Alignment:
Q  107 tgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgatctatgcctatgga 197  Q
    ||||||||||||||   | ||||| ||| |||||||||||||||||| ||| |   ||||||| ||||||||||||||| |||||||||||    
T  35225316 tgaaattcgtgggaagttaaacacccttgccttgtccccaaatactcggtatgtaacttatcttgtgttcaagatgatcaatgcctatgga 35225226  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 35147723 - 35147654
Alignment:
Q  115 gtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    ||||||| || ||||| |||  ||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  35147723 gtgggacgataaacacccttagcttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35147654  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 35190741 - 35190668
Alignment:
Q  111 attcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    ||||||||||  || || || ||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  35190741 attcgtgggatgataaatacccttgccttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35190668  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 35205326 - 35205237
Alignment:
Q  108 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgatctatgcctatgga 197  Q
    |||||||||||||  ||||||| |||| | ||||| ||||||||||| || || |||||||| ||||||||||||||  ||||| |||||    
T  35205326 gaaattcgtgggatgattaacaatcttgcattgtctccaaatactcaatatgcagcttatcttgtgttcaagatgattgatgccgatgga 35205237  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 35295648 - 35295725
Alignment:
Q  107 tgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    ||||||||||||||  || ||||| | | ||||||||||||||||||| || || |||||||| ||||||||||||||    
T  35295648 tgaaattcgtgggatgataaacacccctgccttgtccccaaatactcaatatgcagcttatcttgtgttcaagatgat 35295725  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 35200283 - 35200237
Alignment:
Q  138 ttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||    
T  35200283 ttgtccccaaatactcagtatgcagcttatcttgtgttcaagatgat 35200237  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 35212368 - 35212279
Alignment:
Q  108 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgatctatgcctatgga 197  Q
    ||||||||||||   ||||||  |||| ||||||| ||||||||||  || ||||||||||| ||||||||||||||  ||||| |||||    
T  35212368 gaaattcgtggggtgattaacgatcttgccttgtctccaaatactcgctatgcggcttatcttgtgttcaagatgattgatgcccatgga 35212279  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 35248640 - 35248593
Alignment:
Q  137 cttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    ||||||||||||||||||||| || |||||||| ||||||||| ||||    
T  35248640 cttgtccccaaatactcagtatgcagcttatcttgtgttcaaggtgat 35248593  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 23332211 - 23332078
Alignment:
Q  64 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 163  Q
    ||||||| ||||||||||||||||||  |||||| | ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| || ||    
T  23332211 acaggttccctgaagttgctaagcttcgtcttttgttctcgcatgaaatttgtgggattattaacactctttcattgtccccaaatactcagtatgcagc 23332112  T
Q  164 ttatctcgtgttcaagatgatctatgcctatgga 197  Q
    ||| |||||||| ||||| || |||||| |||||    
T  23332111 ttacctcgtgtttaagataatttatgcccatgga 23332078  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 19246719 - 19246870
Alignment:
Q  64 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 163  Q
    ||||||| || ||||||||||||||   |||| | | |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| || ||    
T  19246719 acaggttcccggaagttgctaagctcagtcttgtgttctcgcatgaaattcgtggtattattaagactctttccttgtccccaaatactcagtatgcagc 19246818  T
Q  164 ttatctcgtgttcaagatgatctatgcctatggacaaaagaacaaacccgtg 215  Q
    ||||||||| |||||||| ||  |||||| ||||   |||||| ||||||||    
T  19246819 ttatctcgtcttcaagataattgatgcctgtggaagtaagaacgaacccgtg 19246870  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 899427 - 899547
Alignment:
Q  64 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 163  Q
    |||||||||||||||| | |||||||| |||| | | ||||| |||||||||||| |  ||||||||| |||||||||||| |||||||  ||| |||||    
T  899427 acaggtttcctgaagtcgttaagctttgtcttgtgttctcgcttgaaattcgtggaataattaacactttttccttgtcccaaaatacttggtatgcggc 899526  T
Q  164 ttatctcgtgttcaagatgat 184  Q
    |||||| ||||||||||||||    
T  899527 ttatcttgtgttcaagatgat 899547  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 17664312 - 17664433
Alignment:
Q  64 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaac----actctttccttgtccccaaatactcagtacg 159  Q
    ||||||| || ||||||||||||||   |||| | | |||||||||||||||||| | ||||||     |||||||| |||||||||||||||||||| |    
T  17664312 acaggttcccggaagttgctaagctcagtcttgtgttctcgcatgaaattcgtggtattattaattaagactctttcattgtccccaaatactcagtatg 17664411  T
Q  160 cggcttatctcgtgttcaagat 181  Q
    | ||||||||||| ||||||||    
T  17664412 cagcttatctcgtcttcaagat 17664433  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 53924118 - 53924160
Alignment:
Q  137 cttgtccccaaatactcagtacgcggcttatctcgtgttcaag 179  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||    
T  53924118 cttgtccccaaatactcggtatgcggcttatcttgtgttcaag 53924160  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 38635001 - 38634919
Alignment:
Q  102 tcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 184  Q
    |||| |||||||||||| |  || |||||||||| |||||||| |||||||||||| |  |||||||| |||||| |||||||    
T  38635001 tcgcttgaaattcgtggaagaataaacactctttacttgtcccgaaatactcagtatgtagcttatcttgtgttccagatgat 38634919  T

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