View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_high_78 (Length: 239)
Name: NF6210_high_78
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_78 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5789774 - 5789601
Alignment:
| Q |
1 |
aaaaacaaaacttgtctcttgggttggttccaaattatatcaccnnnnnnnccgactagtccttgttcttgttcttgttccatccttcataaactgtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5789774 |
aaaaacaaaacttgtctcttgggttggttccaaattatatcaccaaaaaaaccaactagtccttgttcttgttcttgttccatccttcataaactgtttc |
5789675 |
T |
|
| Q |
101 |
tgagttcaatatcaactttttcttcttctactttgttcattctctctcactattcactactgtgagctaaatag |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5789674 |
tgagttcaatatcaactttttcttcttctactttgttcattctctctcactattcactactgtgagctaaatag |
5789601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University