View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_79 (Length: 239)
Name: NF6210_high_79
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_79 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 52828642 - 52828870
Alignment:
| Q |
10 |
catcatcaatctttgctaatttatgcaaataaagaatcatactagtctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtga |
109 |
Q |
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| T |
52828642 |
catcatcaatctttgctaatttatgcaaataaagaatcatactaatctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtga |
52828741 |
T |
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| Q |
110 |
aatggtggttaatataaacttcaaaaaagaacaataatatgaacattttccatctgaataagaaagttggagatctttagcttctagaccgttaaacttc |
209 |
Q |
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| T |
52828742 |
aatggtggttaatataaacttcaaaaaagaacaataatatgaacattttccatctgaat-agaaagttggagatctttagcttctagaccgttaaacttc |
52828840 |
T |
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| Q |
210 |
aagcaaccctatgtctaatatatagggtac |
239 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52828841 |
aagcaaccctatgtctaatatatagggtac |
52828870 |
T |
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