View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_9 (Length: 538)
Name: NF6210_high_9
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 20998933 - 20998430
Alignment:
| Q |
19 |
ggctacacttaatttatctctgtgtttgttcttgacagctcaaaactctatctcatacaacattgtcggtcttacagctgtcctgtaaaattttccttta |
118 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |
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| T |
20998933 |
ggctacgcttaatttatctctatgtttgttcttgacagctcaaaactctatctcatacaacatcgtcagtcttacagctgtcctgtaaaattttcctatc |
20998834 |
T |
|
| Q |
119 |
aagttaagtggttttttaacctagcaacaacaataaaattaaaattggaacatcaaacaaccttatactgaatcttaatctgttgctcggtccttccaca |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20998833 |
----taagtggttttttaacctagcaacaacaataatattaaaattggaacatcaaacaaccttatactgaatcttaatctgttgctcagtccttccaca |
20998738 |
T |
|
| Q |
219 |
cgcctcggcaagcgccttaataatcgaagcatcaccaattcccaattccaacccttcatgcgccggcgcaattctattcgctgataaataaacaacaagc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20998737 |
cgcctcggcaagcgccttaataatcgaagcatcaccaattcccaattccaacccttcatgcgccggcgcaattctattcgctgataaataaacaacaggc |
20998638 |
T |
|
| Q |
319 |
acaagatcctccggcgtagcatgtatcacagttctcaacaaattacacacaatgtcagtgatcacaatccttccactctcttcattaatcatatcaaacg |
418 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
20998637 |
acaagatcttccggtgtagcatgtatcacagttctcaacaaattacacacaatgtcagtgatcacaatcctcccactctcttcgttaatcatatcaaacg |
20998538 |
T |
|
| Q |
419 |
ctaagcagagaaacaaaaacggaacaggtttgtctttctcccagcaaacaaccgaactcggatcgaaactcgccggtttcttcttcagctgcggaacctt |
518 |
Q |
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| T |
20998537 |
ccaaacagagaaacaaaaacggaacaggtttgtctttctcccagcaaacaaccgaactcggatcgaaactcgccggtttcttcttcagctgcggaacctt |
20998438 |
T |
|
| Q |
519 |
ttccttca |
526 |
Q |
| |
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|||||||| |
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| T |
20998437 |
ttccttca |
20998430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 167 - 526
Target Start/End: Complemental strand, 20988557 - 20988198
Alignment:
| Q |
167 |
aacatcaaacaaccttatactgaatcttaatctgttgctcggtccttccacacgcctcggcaagcgccttaataatcgaagcatcaccaattcccaattc |
266 |
Q |
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|||| |||| ||||||||| ||| |||||| |||| ||| |||||||||||||| || ||||||||| |||| |||||||||||||| |||||||| || |
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| T |
20988557 |
aacaacaaaaaaccttatattgagacttaatatgtttctcagtccttccacacgcatcagcaagcgccctaatgatcgaagcatcaccgattcccaactc |
20988458 |
T |
|
| Q |
267 |
caacccttcatgcgccggcgcaattctattcgctgataaataaacaacaagcacaagatcctccggcgtagcatgtatcacagttctcaacaaattacac |
366 |
Q |
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| T |
20988457 |
taaccctttatacgccggcgcaattttattcgctgaaagataaacaaccggaacaagatcatcaggtgtggcatgtatcacagtcctcaacagattacac |
20988358 |
T |
|
| Q |
367 |
acaatgtcagtgatcacaatccttccactctcttcattaatcatatcaaacgctaagcagagaaacaaaaacggaacaggtttgtctttctcccagcaaa |
466 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
20988357 |
acaatctcagtgatcacaattcttcccctctctttgctaatcaaatcaaacgctaaagagagaaacaaaaacggcacaggtttgtttttctcccagcaaa |
20988258 |
T |
|
| Q |
467 |
caaccgaactcggatcgaaactcgccggtttcttcttcagctgcggaaccttttccttca |
526 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||||| |||||| |||||||||| |
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|
| T |
20988257 |
caaccgaactcggatcgaaattctccggtttcttcttcagctccggaactttttccttca |
20988198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 11389588 - 11389545
Alignment:
| Q |
72 |
catacaacattgtcggtcttacagctgtcctgtaaaattttcct |
115 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
11389588 |
catacaacattgtcggtcttacaactgtccgataaaattttcct |
11389545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 55244169 - 55244128
Alignment:
| Q |
73 |
atacaacattgtcggtcttacagctgtcctgtaaaattttcc |
114 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
55244169 |
atacaacattgtcggtcttacagctgtcagataaaattttcc |
55244128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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