View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_high_94 (Length: 220)
Name: NF6210_high_94
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_high_94 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39287196 - 39287415
Alignment:
| Q |
1 |
catatgcacgctagcattattaatcgaaaagataaatataaaatcattggggcacaagaaccaaaagctatctaaaactgaagctcaacatttacttctg |
100 |
Q |
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| T |
39287196 |
catatgcacgctagcattattaatcgaaaagataaatataaaatcattggggcacaagaaccaaaagctatctaaaactgaagctcaacatttacttctg |
39287295 |
T |
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| Q |
101 |
tatctaaagctttctgctgttcccttgaattgtttttaacaatcaattcacttataaattgattgaaattattactagaactaccatcttcctccaaagc |
200 |
Q |
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| T |
39287296 |
tatctaaagctttctgctgttcccttgaattgtttttaacaatcaattcacttataaattgattgaaattattactagaactaccatcttcctccaaagc |
39287395 |
T |
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| Q |
201 |
ttttcttgcagactctttaa |
220 |
Q |
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|||||||||||| ||||||| |
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| T |
39287396 |
ttttcttgcagaatctttaa |
39287415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 39491718 - 39491620
Alignment:
| Q |
122 |
cccttgaattgtttttaacaatcaattcacttataaattgattgaaattattactagaactaccatcttcctccaaagcttttcttgcagactctttaa |
220 |
Q |
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| T |
39491718 |
cccttggatcgttcttaacaaccaattcactgataaacttattgaagttcttgctagaactaccaccttcctgtaaagtttttcttgccaactctttaa |
39491620 |
T |
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