View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_1 (Length: 652)
Name: NF6210_low_1
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 42 - 634
Target Start/End: Original strand, 45709988 - 45710582
Alignment:
| Q |
42 |
aaacacacaagttaagcaagataggaccatcaagagtttaattactatacattaacgatataaagttgtcatatttattaattgacgcactaacatatca |
141 |
Q |
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| T |
45709988 |
aaacacacaagttaagcaagataggaccatcaagagtttaattactatacattaacgatataaagttgtcatatttattaattgacgcactaacatatca |
45710087 |
T |
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| Q |
142 |
ttgagtacatgcataaaataattgtatattgacaatgcatactaattaaattcatatatcaaactttgcagattttgattatnnnnnnntaattgcagca |
241 |
Q |
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| T |
45710088 |
ttgagtacatgcataaaataattgtatattgacaatgcatactaattaaattcatatatcaaactttgcagattttgataataaaaaaataattgcagca |
45710187 |
T |
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| Q |
242 |
gaaatataactgcggccacaactatattctcatgnnnnnnnnt--tattacgaaaacaaatatttgaaagaatgactgttaggttaggtaggacctacaa |
339 |
Q |
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| T |
45710188 |
gaaatataactgcggccacaactatattctcatgaaaaaaaaaaatattacgaaagcaaatatatgaaagaatgactgttaggttaggtaggacctacaa |
45710287 |
T |
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| Q |
340 |
ggaggccaaagttgaagccaacgatgacggtattggcgatggaaatggaagcgagttgaacgtcgccaaggtgaccggcaaaggcttgagtaacgacgtt |
439 |
Q |
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| T |
45710288 |
ggaggccaaaattgaagccaacgatgacggtattggcgatggaaatggaagcgagttgaacgtcaccaaggtgaccggcaaaggcttgagtaacgacgtt |
45710387 |
T |
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| Q |
440 |
catggtgaaagatgcgacgcggctgaaaatagagggaccaactatgtgccatagtttcttcgtttcaatccatagtttcttgccaaattcttgttcatca |
539 |
Q |
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| T |
45710388 |
catggtgaaagatgcgacgcggctgaaaatagagggaccaactatgtgccatagtttcttcgtttcaaaccatagtttcttgccaaattcttgttcatca |
45710487 |
T |
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| Q |
540 |
tcatcctcatgttgatgttcgttaatggtagatatttcttttgacaagagagattgtataagattgtgatcagcatcattattctctctattgat |
634 |
Q |
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| T |
45710488 |
tcatcctcatgttgatgtttgttaatggtagatatttcttttgacaagagagattgtataagattgtgatcagcatcattattctctctattgat |
45710582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 45709953 - 45709985
Alignment:
| Q |
17 |
caactagctccatcataaaaaccacaaacacac |
49 |
Q |
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| T |
45709953 |
caactagctccatcataaaaaccacaaacacac |
45709985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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