View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_10 (Length: 500)

Name: NF6210_low_10
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_10
NF6210_low_10
[»] chr1 (2 HSPs)
chr1 (269-482)||(18236585-18236798)
chr1 (13-221)||(18236846-18237053)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 269 - 482
Target Start/End: Complemental strand, 18236798 - 18236585
Alignment:
Q  269 gatgactgagacaatatatttgtaaaagcaggcacaatataaaacatatggcaaaacattttgacagaaccattgaggtaaaatgaatataagtttaata 368  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18236798 gatgacagagacaatatatttgtaaaagcaggcacaatataaaacatatggcaaaacattttgacagaaccattgaggtaaaatgaatatacgtttaata 18236699  T
Q  369 tgcactttagcattcatcacttctcttgaaaacaacactactctctctacaagcactcttcttgacctttctctacaaaagctttatgctgccctttcgc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18236698 tgcactttagcattcatcacttctcttgaaaacaacactactctctctacaagcactcttcttgacctttctctacaaaagctttatgctgccctttcgc 18236599  T
Q  469 cctagccatgtaga 482  Q
    ||||||||||||||    
T  18236598 cctagccatgtaga 18236585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 18237053 - 18236846
Alignment:
Q  13 aaaatagataaaagacaaagaaatagcgttaaaattggagtattctcagttttgggaacaataccattatttaacttccaagcaatgattttaactacaa 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18237053 aaaatagataaa-gacaaagaaatagcgttaaaattggagtattctcagttttgggaacaataccattatttaacttccaagcaatgattttaactacaa 18236955  T
Q  113 ttgcttccgtttttagtttctttctgcatttattttgtaagacaactttgtaaactcacaattcttaatcaagtgaccattcctgactgcaccatcactg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18236954 ttgcttccgtttttagtttctttctgcatttattttgtaagacaactttgtaaactcacaattcttaatcaagtgaccattcctgactgcaccatcactg 18236855  T
Q  213 agatattat 221  Q
    |||||||||    
T  18236854 agatattat 18236846  T

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