View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_low_100 (Length: 215)
Name: NF6210_low_100
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_100 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 40718442 - 40718258
Alignment:
| Q |
19 |
gtaaaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40718442 |
gtaaaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaa |
40718343 |
T |
|
| Q |
119 |
agttatatctgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcacaggttctgc |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40718342 |
agttatatatgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcacagattctgc |
40718258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 14183683 - 14183510
Alignment:
| Q |
21 |
aaaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaag |
120 |
Q |
| |
|
|||||||| ||||||||| |||| ||||| |||||| |||||||| ||||||||||||| |||||||||||||||||| | ||||||| |||||| |
|
|
| T |
14183683 |
aaaagcaagacaaacaatgccatctgcaacatcaacaaatgtactaataggatgcaacttaacatccgcacctttaaaatgtgtcgttattataggaaaa |
14183584 |
T |
|
| Q |
121 |
ttatatctgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcac |
194 |
Q |
| |
|
| ||||| ||||||||| |||||||||||||| ||| | | |||||||||| |||||||| |||||||| |
|
|
| T |
14183583 |
tcatatccatctgatgtgacgctatagcaaaggttaaataatcgggttggatcattaacacgcttcagtttcac |
14183510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 14192613 - 14192467
Alignment:
| Q |
41 |
catcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagttatatctgtctgatgtggt |
140 |
Q |
| |
|
|||| ||||| |||||||| || ||||| |||||||| | | ||| ||||||||||||||| ||| |||| |||||| | ||||| || | | || |
|
|
| T |
14192613 |
catcagcaaccgaaacaaatgtgctaataggatgcaaatcgacatctgcacctttaaaatgcattgtgattataggaaaatcatatccctcagctttgac |
14192514 |
T |
|
| Q |
141 |
actatagcaaaggtttaattgttgagttggatcatcaacacgctcta |
187 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||||||| |||| |
|
|
| T |
14192513 |
actatagcaaaggtttaatgtttgagtaggatcgtcaacacgttcta |
14192467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 19648847 - 19648985
Alignment:
| Q |
56 |
caaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagttatatctgtctgatgtggtactatagcaaaggtt |
155 |
Q |
| |
|
||||||||||||| || | |||||||||||| |||||||||||||| || || |||| |||||| | |||| |||||||||| ||||||| |||||||| |
|
|
| T |
19648847 |
caaaggtactaattgggttcaacttaatatctgcacctttaaaatgtgcagtgattataggaaaatcatattggtctgatgtgatactataacaaaggtt |
19648946 |
T |
|
| Q |
156 |
taattgttgagttggatcatcaacacgctctagtttcac |
194 |
Q |
| |
|
|||| ||||| | |||||||||||||| ||||||||||| |
|
|
| T |
19648947 |
taatagttgattaggatcatcaacacgatctagtttcac |
19648985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 34666432 - 34666260
Alignment:
| Q |
22 |
aaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagt |
121 |
Q |
| |
|
||||||||||||||||| |||| | || | ||||||||||||||| | |||||||| |||||| |||||||||||||| || || |||| |||||| | |
|
|
| T |
34666432 |
aaagcaaagcaaacaataccatcagtaattggaacaaaggtactaatagaatgcaactcaatatcggcacctttaaaatgtgcggtgattataggaaaat |
34666333 |
T |
|
| Q |
122 |
tatatctgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcac |
194 |
Q |
| |
|
|||| | |||| | ||||||||| ||| | ||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
34666332 |
catattcatttgatttcaaactatagcataggctgaattgttgattaggatcatcaacacgatctagtttcac |
34666260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 34646738 - 34646566
Alignment:
| Q |
22 |
aaagcaaagcaaacaatgtcatcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaagt |
121 |
Q |
| |
|
||||||||||||||||| |||| | || | ||||||||||||||| | |||||||| || ||| |||||||||||||| | || |||| |||||| | |
|
|
| T |
34646738 |
aaagcaaagcaaacaataccatcagtaattggaacaaaggtactaatagaatgcaactcaacatcggcacctttaaaatgtacggtgattataggaaaat |
34646639 |
T |
|
| Q |
122 |
tatatctgtctgatgtggtactatagcaaaggtttaattgttgagttggatcatcaacacgctctagtttcac |
194 |
Q |
| |
|
|||| | |||| | ||||||||| ||| | ||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
34646638 |
catattcatttgatttcaaactatagcataggctgaattgttgattaggatcatcaacacgatctagtttcac |
34646566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 45645899 - 45645837
Alignment:
| Q |
57 |
aaaggtactaatgggatgcaacttaatatccgcacctttaaaatgcgctgttattagaggaaa |
119 |
Q |
| |
|
|||||||||||| | |||||||| || ||| |||||||||||||| || || ||||||||||| |
|
|
| T |
45645899 |
aaaggtactaatagaatgcaactcaacatcagcacctttaaaatgtgcggtgattagaggaaa |
45645837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University