View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_low_101 (Length: 214)
Name: NF6210_low_101
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_101 |
 | |
|
| [»] scaffold0710 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 51804589 - 51804409
Alignment:
| Q |
1 |
aagtccctc-tttcaaagcatacgttcaattacatctgtcattccattgcttgttgtatgtcatctcttgtaagttatatcttaaattctttatgttatg |
99 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51804589 |
aagtccctcgtttcaaagcatatcttcaattacatctgtcatatcattgcttgttgtatgtcatctctagtaagttatatcttaaattctttatgttatg |
51804490 |
T |
|
| Q |
100 |
ctctaatagtggacttgttatattcatctaagcttgcttgagaaattgcctgctcgatatatttcaaagttttctgatatt |
180 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51804489 |
ctctaagagtggacttgttctattcatctaagcatgcttgagaaattgcctgctcgatatatttgaaagttttctgatatt |
51804409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 51808472 - 51808358
Alignment:
| Q |
67 |
ttgtaagttatatcttaaattctttatg-ttatgctctaatagtggacttgttatattcatctaagcttgcttgagaaattgcctgctcgatatatttca |
165 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| | |
|
|
| T |
51808472 |
ttgtatgttatatcttaaattctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttga |
51808373 |
T |
|
| Q |
166 |
aagttttctgatatt |
180 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
51808372 |
aagttttctgatatt |
51808358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 51780684 - 51780640
Alignment:
| Q |
136 |
cttgagaaattgcctgctcgatatatttcaaagttttctgatatt |
180 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
51780684 |
cttgtgaaattgcctgctcgagatatttgaaagttttctgatatt |
51780640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 51768201 - 51768157
Alignment:
| Q |
136 |
cttgagaaattgcctgctcgatatatttcaaagttttctgatatt |
180 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
51768201 |
cttgagaaatcgccttttcgatatatttgaaagttttctgatatt |
51768157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 7332 - 7284
Alignment:
| Q |
132 |
cttgcttgagaaattgcctgctcgatatatttcaaagttttctgatatt |
180 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
7332 |
cttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
7284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University